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AAED1 (AhpC/TSA antioxidant enzyme domain containing 1)

Identity

Alias_namesC9orf21
chromosome 9 open reading frame 21
Other alias
HGNC (Hugo) AAED1
LocusID (NCBI) 195827
Atlas_Id 60014
Location 9q22.33  [Link to chromosome band 9q22]
Location_base_pair Starts at 96641251 and ends at 96655317 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AAED1   16881
Cards
Entrez_Gene (NCBI)AAED1  195827  AhpC/TSA antioxidant enzyme domain containing 1
AliasesC9orf21
GeneCards (Weizmann)AAED1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:96641251-96655317 [Contig_View]  AAED1 [Vega]
TCGA cBioPortalAAED1
AceView (NCBI)AAED1
Genatlas (Paris)AAED1
WikiGenes195827
SOURCE (Princeton)AAED1
Genetics Home Reference (NIH)AAED1
Genomic and cartography
GoldenPath hg38 (UCSC)AAED1  -     chr9:96641251-96655317 -  9q22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AAED1  -     9q22.33   [Description]    (hg19-Feb_2009)
EnsemblAAED1 - 9q22.33 [CytoView hg19]  AAED1 - 9q22.33 [CytoView hg38]
Mapping of homologs : NCBIAAED1 [Mapview hg19]  AAED1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC136501 BC136503 BF445089 BK000255 BM843088
RefSeq transcript (Entrez)NM_153698
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AAED1
Cluster EST : UnigeneHs.44640 [ NCBI ]
CGAP (NCI)Hs.44640
Gene ExpressionAAED1 [ NCBI-GEO ]   AAED1 [ EBI - ARRAY_EXPRESS ]   AAED1 [ SEEK ]   AAED1 [ MEM ]
Gene Expression Viewer (FireBrowse)AAED1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)195827
GTEX Portal (Tissue expression)AAED1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7RTV5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7RTV5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7RTV5
Splice isoforms : SwissVarQ7RTV5
PhosPhoSitePlusQ7RTV5
Domains : Interpro (EBI)FAM213/AAED1    Thioredoxin-like_fold   
Domain families : Pfam (Sanger)AhpC-TSA_2 (PF13911)   
Domain families : Pfam (NCBI)pfam13911   
Conserved Domain (NCBI)AAED1
DMDM Disease mutations195827
Blocks (Seattle)AAED1
SuperfamilyQ7RTV5
Peptide AtlasQ7RTV5
HPRD18571
IPIIPI00146380   IPI00552550   IPI00552717   
Protein Interaction databases
DIP (DOE-UCLA)Q7RTV5
IntAct (EBI)Q7RTV5
BioGRIDAAED1
STRING (EMBL)AAED1
ZODIACAAED1
Ontologies - Pathways
QuickGOQ7RTV5
Ontology : AmiGOantioxidant activity  oxidation-reduction process  cellular oxidant detoxification  
Ontology : EGO-EBIantioxidant activity  oxidation-reduction process  cellular oxidant detoxification  
NDEx NetworkAAED1
Atlas of Cancer Signalling NetworkAAED1
Wikipedia pathwaysAAED1
Orthology - Evolution
OrthoDB195827
Phylogenetic Trees/Animal Genes : TreeFamAAED1
HOVERGENQ7RTV5
HOGENOMQ7RTV5
Homologs : HomoloGeneAAED1
Homology/Alignments : Family Browser (UCSC)AAED1
Gene fusions - Rearrangements
Fusion: Tumor Portal AAED1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAAED1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AAED1
dbVarAAED1
ClinVarAAED1
1000_GenomesAAED1 
Exome Variant ServerAAED1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP195827
Genomic Variants (DGV)AAED1 [DGVbeta]
DECIPHERAAED1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAAED1 
Mutations
ICGC Data PortalAAED1 
TCGA Data PortalAAED1 
Broad Tumor PortalAAED1
OASIS PortalAAED1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDAAED1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AAED1
DgiDB (Drug Gene Interaction Database)AAED1
DoCM (Curated mutations)AAED1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AAED1 (select a term)
intoGenAAED1
Cancer3DAAED1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenAAED1
Genetic Testing Registry AAED1
NextProtQ7RTV5 [Medical]
TSGene195827
GENETestsAAED1
Target ValidationAAED1
Huge Navigator AAED1 [HugePedia]
snp3D : Map Gene to Disease195827
BioCentury BCIQAAED1
ClinGenAAED1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD195827
Chemical/Pharm GKB GenePA38190
Clinical trialAAED1
Miscellaneous
canSAR (ICR)AAED1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAAED1
EVEXAAED1
GoPubMedAAED1
iHOPAAED1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:36:40 CET 2017

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