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AAMDC (adipogenesis associated Mth938 domain containing)

Identity

Alias_namesC11orf67
chromosome 11 open reading frame 67
Alias_symbol (synonym)PTD015
FLJ21035
CK067
Other alias
HGNC (Hugo) AAMDC
LocusID (NCBI) 28971
Atlas_Id 60016
Location 11q14.1  [Link to chromosome band 11q14]
Location_base_pair Starts at 77821114 and ends at 77900785 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AAMDC (11q14.1) / SCGB1D1 (11q12.3)ARHGEF18 (19p13.2) / AAMDC (11q14.1)SLC12A7 (5p15.33) / AAMDC (11q14.1)
TMEM135 (11q14.2) / AAMDC (11q14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AAMDC   30205
Cards
Entrez_Gene (NCBI)AAMDC  28971  adipogenesis associated Mth938 domain containing
AliasesC11orf67; CK067; PTD015
GeneCards (Weizmann)AAMDC
Ensembl hg19 (Hinxton)ENSG00000087884 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000087884 [Gene_View]  chr11:77821114-77900785 [Contig_View]  AAMDC [Vega]
ICGC DataPortalENSG00000087884
TCGA cBioPortalAAMDC
AceView (NCBI)AAMDC
Genatlas (Paris)AAMDC
WikiGenes28971
SOURCE (Princeton)AAMDC
Genetics Home Reference (NIH)AAMDC
Genomic and cartography
GoldenPath hg38 (UCSC)AAMDC  -     chr11:77821114-77900785 +  11q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AAMDC  -     11q14.1   [Description]    (hg19-Feb_2009)
EnsemblAAMDC - 11q14.1 [CytoView hg19]  AAMDC - 11q14.1 [CytoView hg38]
Mapping of homologs : NCBIAAMDC [Mapview hg19]  AAMDC [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF092136 AI569731 AK024688 BC002752 BC016854
RefSeq transcript (Entrez)NM_001316957 NM_001316958 NM_001316960 NM_001316961 NM_001316962 NM_024684
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AAMDC
Cluster EST : UnigeneHs.745040 [ NCBI ]
CGAP (NCI)Hs.745040
Alternative Splicing GalleryENSG00000087884
Gene ExpressionAAMDC [ NCBI-GEO ]   AAMDC [ EBI - ARRAY_EXPRESS ]   AAMDC [ SEEK ]   AAMDC [ MEM ]
Gene Expression Viewer (FireBrowse)AAMDC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28971
GTEX Portal (Tissue expression)AAMDC
Human Protein AtlasENSG00000087884-AAMDC [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H7C9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H7C9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H7C9
Splice isoforms : SwissVarQ9H7C9
PhosPhoSitePlusQ9H7C9
Domains : Interpro (EBI)AAMDC    NDUFAF3/AAMDC   
Domain families : Pfam (Sanger)DUF498 (PF04430)   
Domain families : Pfam (NCBI)pfam04430   
Conserved Domain (NCBI)AAMDC
DMDM Disease mutations28971
Blocks (Seattle)AAMDC
PDB (SRS)2AB1    2Q4Q   
PDB (PDBSum)2AB1    2Q4Q   
PDB (IMB)2AB1    2Q4Q   
PDB (RSDB)2AB1    2Q4Q   
Structural Biology KnowledgeBase2AB1    2Q4Q   
SCOP (Structural Classification of Proteins)2AB1    2Q4Q   
CATH (Classification of proteins structures)2AB1    2Q4Q   
SuperfamilyQ9H7C9
Human Protein Atlas [tissue]ENSG00000087884-AAMDC [tissue]
Peptide AtlasQ9H7C9
HPRD17924
IPIIPI00100775   IPI00022308   IPI00748229   IPI00977935   IPI00982048   IPI00976107   IPI00977242   IPI00980367   IPI00980364   
Protein Interaction databases
DIP (DOE-UCLA)Q9H7C9
IntAct (EBI)Q9H7C9
FunCoupENSG00000087884
BioGRIDAAMDC
STRING (EMBL)AAMDC
ZODIACAAMDC
Ontologies - Pathways
QuickGOQ9H7C9
Ontology : AmiGOprotein binding  cytoplasm  negative regulation of apoptotic process  positive regulation of fat cell differentiation  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIprotein binding  cytoplasm  negative regulation of apoptotic process  positive regulation of fat cell differentiation  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkAAMDC
Atlas of Cancer Signalling NetworkAAMDC
Wikipedia pathwaysAAMDC
Orthology - Evolution
OrthoDB28971
GeneTree (enSembl)ENSG00000087884
Phylogenetic Trees/Animal Genes : TreeFamAAMDC
HOVERGENQ9H7C9
HOGENOMQ9H7C9
Homologs : HomoloGeneAAMDC
Homology/Alignments : Family Browser (UCSC)AAMDC
Gene fusions - Rearrangements
Tumor Fusion PortalAAMDC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAAMDC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AAMDC
dbVarAAMDC
ClinVarAAMDC
1000_GenomesAAMDC 
Exome Variant ServerAAMDC
ExAC (Exome Aggregation Consortium)ENSG00000087884
GNOMAD BrowserENSG00000087884
Genetic variants : HAPMAP28971
Genomic Variants (DGV)AAMDC [DGVbeta]
DECIPHERAAMDC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAAMDC 
Mutations
ICGC Data PortalAAMDC 
TCGA Data PortalAAMDC 
Broad Tumor PortalAAMDC
OASIS PortalAAMDC [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDAAMDC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch AAMDC
DgiDB (Drug Gene Interaction Database)AAMDC
DoCM (Curated mutations)AAMDC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AAMDC (select a term)
intoGenAAMDC
Cancer3DAAMDC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETAAMDC
MedgenAAMDC
Genetic Testing Registry AAMDC
NextProtQ9H7C9 [Medical]
TSGene28971
GENETestsAAMDC
Target ValidationAAMDC
Huge Navigator AAMDC [HugePedia]
snp3D : Map Gene to Disease28971
BioCentury BCIQAAMDC
ClinGenAAMDC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28971
Chemical/Pharm GKB GenePA144596486
Clinical trialAAMDC
Miscellaneous
canSAR (ICR)AAMDC (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAAMDC
EVEXAAMDC
GoPubMedAAMDC
iHOPAAMDC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:22:55 CET 2017

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