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AAR2 (AAR2 splicing factor homolog)

Identity

Alias_namesC20orf4
chromosome 20 open reading frame 4
AAR2 splicing factor homolog (S. cerevisiae)
Alias_symbol (synonym)bA234K24.2
Other aliasCGI-23
HGNC (Hugo) AAR2
LocusID (NCBI) 25980
Atlas_Id 60017
Location 20q11.23  [Link to chromosome band 20q11]
Location_base_pair Starts at 36236417 and ends at 36256941 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AAR2   15886
Cards
Entrez_Gene (NCBI)AAR2  25980  AAR2 splicing factor homolog
AliasesC20orf4; CGI-23
GeneCards (Weizmann)AAR2
Ensembl hg19 (Hinxton)ENSG00000131043 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000131043 [Gene_View]  chr20:36236417-36256941 [Contig_View]  AAR2 [Vega]
ICGC DataPortalENSG00000131043
TCGA cBioPortalAAR2
AceView (NCBI)AAR2
Genatlas (Paris)AAR2
WikiGenes25980
SOURCE (Princeton)AAR2
Genetics Home Reference (NIH)AAR2
Genomic and cartography
GoldenPath hg38 (UCSC)AAR2  -     chr20:36236417-36256941 +  20q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AAR2  -     20q11.23   [Description]    (hg19-Feb_2009)
EnsemblAAR2 - 20q11.23 [CytoView hg19]  AAR2 - 20q11.23 [CytoView hg38]
Mapping of homologs : NCBIAAR2 [Mapview hg19]  AAR2 [Mapview hg38]
OMIM617365   
Gene and transcription
Genbank (Entrez)AF113672 AF132957 AL117419 AW006181 BC001751
RefSeq transcript (Entrez)NM_001271874 NM_015511
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AAR2
Cluster EST : UnigeneHs.744306 [ NCBI ]
CGAP (NCI)Hs.744306
Alternative Splicing GalleryENSG00000131043
Gene ExpressionAAR2 [ NCBI-GEO ]   AAR2 [ EBI - ARRAY_EXPRESS ]   AAR2 [ SEEK ]   AAR2 [ MEM ]
Gene Expression Viewer (FireBrowse)AAR2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25980
GTEX Portal (Tissue expression)AAR2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y312   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y312  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y312
Splice isoforms : SwissVarQ9Y312
PhosPhoSitePlusQ9Y312
Domains : Interpro (EBI)AAR2    AAR2_C    Aar2_N   
Domain families : Pfam (Sanger)AAR2 (PF05282)   
Domain families : Pfam (NCBI)pfam05282   
Conserved Domain (NCBI)AAR2
DMDM Disease mutations25980
Blocks (Seattle)AAR2
SuperfamilyQ9Y312
Human Protein AtlasENSG00000131043
Peptide AtlasQ9Y312
HPRD12767
IPIIPI00166013   IPI00791333   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y312
IntAct (EBI)Q9Y312
FunCoupENSG00000131043
BioGRIDAAR2
STRING (EMBL)AAR2
ZODIACAAR2
Ontologies - Pathways
QuickGOQ9Y312
Ontology : AmiGOspliceosomal tri-snRNP complex assembly  
Ontology : EGO-EBIspliceosomal tri-snRNP complex assembly  
NDEx NetworkAAR2
Atlas of Cancer Signalling NetworkAAR2
Wikipedia pathwaysAAR2
Orthology - Evolution
OrthoDB25980
GeneTree (enSembl)ENSG00000131043
Phylogenetic Trees/Animal Genes : TreeFamAAR2
HOVERGENQ9Y312
HOGENOMQ9Y312
Homologs : HomoloGeneAAR2
Homology/Alignments : Family Browser (UCSC)AAR2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAAR2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AAR2
dbVarAAR2
ClinVarAAR2
1000_GenomesAAR2 
Exome Variant ServerAAR2
ExAC (Exome Aggregation Consortium)AAR2 (select the gene name)
Genetic variants : HAPMAP25980
Genomic Variants (DGV)AAR2 [DGVbeta]
DECIPHERAAR2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAAR2 
Mutations
ICGC Data PortalAAR2 
TCGA Data PortalAAR2 
Broad Tumor PortalAAR2
OASIS PortalAAR2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDAAR2
BioMutasearch AAR2
DgiDB (Drug Gene Interaction Database)AAR2
DoCM (Curated mutations)AAR2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AAR2 (select a term)
intoGenAAR2
Cancer3DAAR2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617365   
Orphanet
MedgenAAR2
Genetic Testing Registry AAR2
NextProtQ9Y312 [Medical]
TSGene25980
GENETestsAAR2
Target ValidationAAR2
Huge Navigator AAR2 [HugePedia]
snp3D : Map Gene to Disease25980
BioCentury BCIQAAR2
ClinGenAAR2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25980
Chemical/Pharm GKB GenePA25753
Clinical trialAAR2
Miscellaneous
canSAR (ICR)AAR2 (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAAR2
EVEXAAR2
GoPubMedAAR2
iHOPAAR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:00:36 CEST 2017

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