Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

AASDH (aminoadipate-semialdehyde dehydrogenase)

Identity

Other namesACSF4
LYS2
NRPS1098
NRPS998
HGNC (Hugo) AASDH
LocusID (NCBI) 132949
Location 4q12
Location_base_pair Starts at 57204457 and ends at 57253638 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)AASDH   23993
Entrez_Gene (NCBI)AASDH  132949  aminoadipate-semialdehyde dehydrogenase
Cards
GeneCards (Weizmann)AASDH
Ensembl (Hinxton)ENSG00000157426 [Gene_View]  chr4:57204457-57253638 [Contig_View]  AASDH [Vega]
AceView (NCBI)AASDH
Genatlas (Paris)AASDH
SOURCE (Stanford)NM_181806
Genomic and cartography
GoldenPath (UCSC)AASDH  -  4q12   chr4:57204457-57253638 -  4q12   [Description]    (hg19-Feb_2009)
EnsemblAASDH - 4q12 [CytoView]
Mapping of homologs : NCBIAASDH [Mapview]
OMIM614365   
Gene and transcription
Genbank (Entrez)AF161436 AF516672 AK294332 AK303733 AK304309
RefSeq transcript (SRS)NM_181806
RefSeq transcript (Entrez)NM_181806
RefSeq genomic (SRS)AC_000136 NC_000004 NC_018915 NT_022853 NW_001838913 NW_004078020
RefSeq genomic (Entrez)AC_000136 NC_000004 NC_018915 NT_022853 NW_001838913 NW_004078020
Consensus coding sequences : CCDS (NCBI)AASDH
Cluster EST : UnigeneHs.104347 [ SRS ] Hs.104347 [ NCBI ]
CGAP (NCI)Hs.104347
Alternative Splicing : Fast-db (Paris)GSHG0023265
Alternative Splicing GalleryENSG00000157426
Gene ExpressionAASDH [ NCBI-GEO ]   AASDH [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4L235 (SRS) Q4L235 (Uniprot)
NextProtQ4L235
With graphics : InterProQ4L235
Splice isoforms : SwissVarQ4L235(Swissvar)
Domaine pattern : Prosite (SRS)ACP_DOMAIN (PS50075)    AMP_BINDING (PS00455)   
Domaine pattern : Prosite (Expaxy)ACP_DOMAIN (PS50075)    AMP_BINDING (PS00455)   
Domains : Interpro (SRS)ACSF4    Acyl_carrier_prot-like    AMP-binding_CS    AMP-dep_Synth/Lig    PQQ_beta_propeller_repeat    Quinonprotein_ADH-like   
Domains : Interpro (EBI)ACSF4    Acyl_carrier_prot-like    AMP-binding_CS    AMP-dep_Synth/Lig    PQQ_beta_propeller_repeat    Quinonprotein_ADH-like   
Related proteins : CluSTrQ4L235
Domain families : Pfam (SRS)AMP-binding (PF00501)    PP-binding (PF00550)   
Domain families : Pfam (Sanger)AMP-binding (PF00501)    PP-binding (PF00550)   
Domain families : Pfam (NCBI)pfam00501    pfam00550   
Domain families : Smart (EMBL)PQQ (SM00564)  
DMDM132949
Blocks (Seattle)Q4L235
Human Protein AtlasENSG00000157426
HPRD12398
IPIIPI00419992   IPI00880184   IPI00879043   IPI00879228   IPI00910118   
Protein Interaction databases
DIP (DOE-UCLA)Q4L235
IntAct (EBI)Q4L235
FunCoupENSG00000157426
REACTOMEAASDH
Protein Interaction Database132949
BioGRIDAASDH
InParanoidQ4L235
Interologous Interaction database Q4L235
IntegromeDBAASDH
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)AASDH
SNP (GeneSNP Utah)AASDH
SNP : HGBaseAASDH
Genetic variants : HAPMAPAASDH
Somatic Mutations in Cancer : COSMICAASDH 
CONAN: Copy Number AnalysisAASDH 
Mutations and Diseases : HGMDAASDH
OMIM614365   
GENETests614365   
Disease Genetic AssociationAASDH
Huge Navigator AASDH [HugePedia]  AASDH [HugeCancerGEM]
Genomic VariantsAASDH  AASDH [DGVbeta]
snp3D : Map Gene to Disease132949
General knowledge
Homologs : HomoloGeneAASDH
Homology/Alignments : Family Browser (UCSC)AASDH
Phylogenetic Trees/Animal Genes : TreeFamAASDH
Catalytic activity : Enzyme6.2.1.- [ Enzyme-Expasy ]   6.2.1.- [ Enzyme-SRS ]   6.2.1.- [ IntEnz-EBI ]   6.2.1.- [ BRENDA ]   6.2.1.- [ KEGG ]   
Chemical/Protein Interactions : CTD132949
Chemical/Pharm GKB GenePA162375178
Clinical trialAASDH
Cancer Resource (Charite)ENSG00000157426
Ontology : AmiGOATP binding  fatty acid metabolic process  acid-thiol ligase activity  
Ontology : EGO-EBIATP binding  fatty acid metabolic process  acid-thiol ligase activity  
Other databases
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
PubGeneAASDH
iHOPAASDH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:29:50 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.