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AATBC (apoptosis associated transcript in bladder cancer)

Identity

Other alias-
HGNC (Hugo) AATBC
LocusID (NCBI) 284837
Atlas_Id 55072
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 43805760 and ends at 43810361 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)AATBC   51526
Cards
Entrez_Gene (NCBI)AATBC  284837  apoptosis associated transcript in bladder cancer
Aliases
GeneCards (Weizmann)AATBC
Ensembl hg19 (Hinxton)ENSG00000215458 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215458 [Gene_View]  chr21:43805760-43810361 [Contig_View]  AATBC [Vega]
ICGC DataPortalENSG00000215458
TCGA cBioPortalAATBC
AceView (NCBI)AATBC
Genatlas (Paris)AATBC
WikiGenes284837
SOURCE (Princeton)AATBC
Genetics Home Reference (NIH)AATBC
Genomic and cartography
GoldenPath hg38 (UCSC)AATBC  -     chr21:43805760-43810361 -  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)AATBC  -     21q22.3   [Description]    (hg19-Feb_2009)
EnsemblAATBC - 21q22.3 [CytoView hg19]  AATBC - 21q22.3 [CytoView hg38]
Mapping of homologs : NCBIAATBC [Mapview hg19]  AATBC [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK093410 AK128598 BC031911 BC034348 BC111558
RefSeq transcript (Entrez)NM_194310
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)AATBC
Cluster EST : UnigeneHs.592159 [ NCBI ]
CGAP (NCI)Hs.592159
Alternative Splicing GalleryENSG00000215458
Gene ExpressionAATBC [ NCBI-GEO ]   AATBC [ EBI - ARRAY_EXPRESS ]   AATBC [ SEEK ]   AATBC [ MEM ]
Gene Expression Viewer (FireBrowse)AATBC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284837
GTEX Portal (Tissue expression)AATBC
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZR03   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZR03  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZR03
Splice isoforms : SwissVarQ6ZR03
PhosPhoSitePlusQ6ZR03
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)AATBC
DMDM Disease mutations284837
Blocks (Seattle)AATBC
SuperfamilyQ6ZR03
Human Protein AtlasENSG00000215458
Peptide AtlasQ6ZR03
HPRD11256
IPIIPI00375590   IPI00878266   IPI00976272   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZR03
IntAct (EBI)Q6ZR03
FunCoupENSG00000215458
BioGRIDAATBC
STRING (EMBL)AATBC
ZODIACAATBC
Ontologies - Pathways
QuickGOQ6ZR03
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkAATBC
Atlas of Cancer Signalling NetworkAATBC
Wikipedia pathwaysAATBC
Orthology - Evolution
OrthoDB284837
GeneTree (enSembl)ENSG00000215458
Phylogenetic Trees/Animal Genes : TreeFamAATBC
HOVERGENQ6ZR03
HOGENOMQ6ZR03
Homologs : HomoloGeneAATBC
Homology/Alignments : Family Browser (UCSC)AATBC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerAATBC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)AATBC
dbVarAATBC
ClinVarAATBC
1000_GenomesAATBC 
Exome Variant ServerAATBC
ExAC (Exome Aggregation Consortium)AATBC (select the gene name)
Genetic variants : HAPMAP284837
Genomic Variants (DGV)AATBC [DGVbeta]
DECIPHERAATBC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisAATBC 
Mutations
ICGC Data PortalAATBC 
TCGA Data PortalAATBC 
Broad Tumor PortalAATBC
OASIS PortalAATBC [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDAATBC
BioMutasearch AATBC
DgiDB (Drug Gene Interaction Database)AATBC
DoCM (Curated mutations)AATBC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)AATBC (select a term)
intoGenAATBC
Cancer3DAATBC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenAATBC
Genetic Testing Registry AATBC
NextProtQ6ZR03 [Medical]
TSGene284837
GENETestsAATBC
Target ValidationAATBC
Huge Navigator AATBC [HugePedia]
snp3D : Map Gene to Disease284837
BioCentury BCIQAATBC
ClinGenAATBC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284837
Clinical trialAATBC
Miscellaneous
canSAR (ICR)AATBC (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineAATBC
EVEXAATBC
GoPubMedAATBC
iHOPAATBC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:22:14 CEST 2017

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