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ABCA10 (ATP binding cassette subfamily A member 10)

Identity

Alias_namesATP-binding cassette
Alias_symbol (synonym)EST698739
Other alias
HGNC (Hugo) ABCA10
LocusID (NCBI) 10349
Atlas_Id 55371
Location 17q24.3  [Link to chromosome band 17q24]
Location_base_pair Starts at 69148007 and ends at 69244815 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BRWD1 (21q22.2) / ABCA10 (17q24.3)HELZ (17q24.2) / ABCA10 (17q24.3)BRWD1 21q22.2 / ABCA10 17q24.3
HELZ 17q24.2 / ABCA10 17q24.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ABCA10   30
Cards
Entrez_Gene (NCBI)ABCA10  10349  ATP binding cassette subfamily A member 10
AliasesEST698739
GeneCards (Weizmann)ABCA10
Ensembl hg19 (Hinxton)ENSG00000154263 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154263 [Gene_View]  chr17:69148007-69244815 [Contig_View]  ABCA10 [Vega]
ICGC DataPortalENSG00000154263
TCGA cBioPortalABCA10
AceView (NCBI)ABCA10
Genatlas (Paris)ABCA10
WikiGenes10349
SOURCE (Princeton)ABCA10
Genetics Home Reference (NIH)ABCA10
Genomic and cartography
GoldenPath hg38 (UCSC)ABCA10  -     chr17:69148007-69244815 -  17q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABCA10  -     17q24.3   [Description]    (hg19-Feb_2009)
EnsemblABCA10 - 17q24.3 [CytoView hg19]  ABCA10 - 17q24.3 [CytoView hg38]
Mapping of homologs : NCBIABCA10 [Mapview hg19]  ABCA10 [Mapview hg38]
OMIM612508   
Gene and transcription
Genbank (Entrez)AK298508 AK310858 AL832004 AY028900 AY247065
RefSeq transcript (Entrez)NM_080282
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ABCA10
Cluster EST : UnigeneHs.25377 [ NCBI ]
CGAP (NCI)Hs.25377
Alternative Splicing GalleryENSG00000154263
Gene ExpressionABCA10 [ NCBI-GEO ]   ABCA10 [ EBI - ARRAY_EXPRESS ]   ABCA10 [ SEEK ]   ABCA10 [ MEM ]
Gene Expression Viewer (FireBrowse)ABCA10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10349
GTEX Portal (Tissue expression)ABCA10
Human Protein AtlasENSG00000154263-ABCA10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWZ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWZ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWZ4
Splice isoforms : SwissVarQ8WWZ4
PhosPhoSitePlusQ8WWZ4
Domaine pattern : Prosite (Expaxy)ABC_TRANSPORTER_1 (PS00211)    ABC_TRANSPORTER_2 (PS50893)   
Domains : Interpro (EBI)AAA+_ATPase    ABC_A    ABC_transporter-like    ABC_transporter_CS    P-loop_NTPase   
Domain families : Pfam (Sanger)ABC_tran (PF00005)   
Domain families : Pfam (NCBI)pfam00005   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)ABCA10
DMDM Disease mutations10349
Blocks (Seattle)ABCA10
SuperfamilyQ8WWZ4
Human Protein Atlas [tissue]ENSG00000154263-ABCA10 [tissue]
Peptide AtlasQ8WWZ4
HPRD12400
IPIIPI00384874   IPI00796837   IPI00789945   IPI00384087   IPI00027882   IPI00977483   IPI00984335   IPI00975709   IPI00973740   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWZ4
IntAct (EBI)Q8WWZ4
FunCoupENSG00000154263
BioGRIDABCA10
STRING (EMBL)ABCA10
ZODIACABCA10
Ontologies - Pathways
QuickGOQ8WWZ4
Ontology : AmiGOATP binding  lipid transport  integral component of membrane  ATPase activity, coupled to transmembrane movement of substances  intracellular membrane-bounded organelle  transmembrane transport  
Ontology : EGO-EBIATP binding  lipid transport  integral component of membrane  ATPase activity, coupled to transmembrane movement of substances  intracellular membrane-bounded organelle  transmembrane transport  
Pathways : KEGGABC transporters   
NDEx NetworkABCA10
Atlas of Cancer Signalling NetworkABCA10
Wikipedia pathwaysABCA10
Orthology - Evolution
OrthoDB10349
GeneTree (enSembl)ENSG00000154263
Phylogenetic Trees/Animal Genes : TreeFamABCA10
HOVERGENQ8WWZ4
HOGENOMQ8WWZ4
Homologs : HomoloGeneABCA10
Homology/Alignments : Family Browser (UCSC)ABCA10
Gene fusions - Rearrangements
Fusion : MitelmanBRWD1/ABCA10 [21q22.2/17q24.3]  [t(17;21)(q24;q22)]  
Fusion : MitelmanHELZ/ABCA10 [17q24.2/17q24.3]  [t(17;17)(q24;q24)]  
Fusion: TCGA_MDACCBRWD1 21q22.2 ABCA10 17q24.3 BRCA
Fusion: TCGA_MDACCHELZ 17q24.2 ABCA10 17q24.3 BLCA
Tumor Fusion PortalABCA10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABCA10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABCA10
dbVarABCA10
ClinVarABCA10
1000_GenomesABCA10 
Exome Variant ServerABCA10
ExAC (Exome Aggregation Consortium)ENSG00000154263
GNOMAD BrowserENSG00000154263
Genetic variants : HAPMAP10349
Genomic Variants (DGV)ABCA10 [DGVbeta]
DECIPHERABCA10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisABCA10 
Mutations
ICGC Data PortalABCA10 
TCGA Data PortalABCA10 
Broad Tumor PortalABCA10
OASIS PortalABCA10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICABCA10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDABCA10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ABCA10
DgiDB (Drug Gene Interaction Database)ABCA10
DoCM (Curated mutations)ABCA10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABCA10 (select a term)
intoGenABCA10
Cancer3DABCA10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612508   
Orphanet
DisGeNETABCA10
MedgenABCA10
Genetic Testing Registry ABCA10
NextProtQ8WWZ4 [Medical]
TSGene10349
GENETestsABCA10
Target ValidationABCA10
Huge Navigator ABCA10 [HugePedia]
snp3D : Map Gene to Disease10349
BioCentury BCIQABCA10
ClinGenABCA10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10349
Chemical/Pharm GKB GenePA24374
Clinical trialABCA10
Miscellaneous
canSAR (ICR)ABCA10 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABCA10
EVEXABCA10
GoPubMedABCA10
iHOPABCA10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:01:35 CET 2017

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