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ABCA10 (ATP binding cassette subfamily A member 10)

Identity

Alias (NCBI)EST698739
HGNC (Hugo) ABCA10
HGNC Alias symbEST698739
HGNC Previous nameATP-binding cassette, sub-family A (ABC1), member 10
LocusID (NCBI) 10349
Atlas_Id 55371
Location 17q24.3  [Link to chromosome band 17q24]
Location_base_pair Starts at 69148007 and ends at 69244848 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BRWD1 (21q22.2) / ABCA10 (17q24.3)HELZ (17q24.2) / ABCA10 (17q24.3)BRWD1 21q22.2 / ABCA10 17q24.3
HELZ 17q24.2 / ABCA10 17q24.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ABCA10   30
Cards
Entrez_Gene (NCBI)ABCA10    ATP binding cassette subfamily A member 10
AliasesEST698739
GeneCards (Weizmann)ABCA10
Ensembl hg19 (Hinxton)ENSG00000154263 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154263 [Gene_View]  ENSG00000154263 [Sequence]  chr17:69148007-69244848 [Contig_View]  ABCA10 [Vega]
ICGC DataPortalENSG00000154263
TCGA cBioPortalABCA10
AceView (NCBI)ABCA10
Genatlas (Paris)ABCA10
SOURCE (Princeton)ABCA10
Genetics Home Reference (NIH)ABCA10
Genomic and cartography
GoldenPath hg38 (UCSC)ABCA10  -     chr17:69148007-69244848 -  17q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABCA10  -     17q24.3   [Description]    (hg19-Feb_2009)
GoldenPathABCA10 - 17q24.3 [CytoView hg19]  ABCA10 - 17q24.3 [CytoView hg38]
ImmunoBaseENSG00000154263
Genome Data Viewer NCBIABCA10 [Mapview hg19]  
OMIM612508   
Gene and transcription
Genbank (Entrez)AK298508 AK310858 AL832004 AY028900 AY247065
RefSeq transcript (Entrez)NM_001377321 NM_080282
Consensus coding sequences : CCDS (NCBI)ABCA10
Gene ExpressionABCA10 [ NCBI-GEO ]   ABCA10 [ EBI - ARRAY_EXPRESS ]   ABCA10 [ SEEK ]   ABCA10 [ MEM ]
Gene Expression Viewer (FireBrowse)ABCA10 [ Firebrowse - Broad ]
GenevisibleExpression of ABCA10 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10349
GTEX Portal (Tissue expression)ABCA10
Human Protein AtlasENSG00000154263-ABCA10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWZ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWZ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWZ4
PhosPhoSitePlusQ8WWZ4
Domaine pattern : Prosite (Expaxy)ABC_TRANSPORTER_1 (PS00211)    ABC_TRANSPORTER_2 (PS50893)   
Domains : Interpro (EBI)AAA+_ATPase    ABC_transporter-like    ABC_transporter_CS    ABCA    P-loop_NTPase   
Domain families : Pfam (Sanger)ABC_tran (PF00005)   
Domain families : Pfam (NCBI)pfam00005   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)ABCA10
SuperfamilyQ8WWZ4
AlphaFold pdb e-kbQ8WWZ4   
Human Protein Atlas [tissue]ENSG00000154263-ABCA10 [tissue]
HPRD12400
Protein Interaction databases
DIP (DOE-UCLA)Q8WWZ4
IntAct (EBI)Q8WWZ4
BioGRIDABCA10
STRING (EMBL)ABCA10
ZODIACABCA10
Ontologies - Pathways
QuickGOQ8WWZ4
Ontology : AmiGOlipid transporter activity  ATP binding  lipid transport  integral component of membrane  ATPase-coupled transmembrane transporter activity  intracellular membrane-bounded organelle  transmembrane transport  
Ontology : EGO-EBIlipid transporter activity  ATP binding  lipid transport  integral component of membrane  ATPase-coupled transmembrane transporter activity  intracellular membrane-bounded organelle  transmembrane transport  
Pathways : KEGGABC transporters   
NDEx NetworkABCA10
Atlas of Cancer Signalling NetworkABCA10
Wikipedia pathwaysABCA10
Orthology - Evolution
OrthoDB10349
GeneTree (enSembl)ENSG00000154263
Phylogenetic Trees/Animal Genes : TreeFamABCA10
Homologs : HomoloGeneABCA10
Homology/Alignments : Family Browser (UCSC)ABCA10
Gene fusions - Rearrangements
Fusion : MitelmanBRWD1/ABCA10 [21q22.2/17q24.3]  
Fusion : MitelmanHELZ/ABCA10 [17q24.2/17q24.3]  
Fusion : QuiverABCA10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABCA10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABCA10
dbVarABCA10
ClinVarABCA10
MonarchABCA10
1000_GenomesABCA10 
Exome Variant ServerABCA10
GNOMAD BrowserENSG00000154263
Varsome BrowserABCA10
ACMGABCA10 variants
VarityQ8WWZ4
Genomic Variants (DGV)ABCA10 [DGVbeta]
DECIPHERABCA10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisABCA10 
Mutations
ICGC Data PortalABCA10 
TCGA Data PortalABCA10 
Broad Tumor PortalABCA10
OASIS PortalABCA10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICABCA10  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DABCA10
Mutations and Diseases : HGMDABCA10
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaABCA10
DgiDB (Drug Gene Interaction Database)ABCA10
DoCM (Curated mutations)ABCA10
CIViC (Clinical Interpretations of Variants in Cancer)ABCA10
Cancer3DABCA10
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612508   
Orphanet
DisGeNETABCA10
MedgenABCA10
Genetic Testing Registry ABCA10
NextProtQ8WWZ4 [Medical]
GENETestsABCA10
Target ValidationABCA10
Huge Navigator ABCA10 [HugePedia]
ClinGenABCA10
Clinical trials, drugs, therapy
MyCancerGenomeABCA10
Protein Interactions : CTDABCA10
Pharm GKB GenePA24374
PharosQ8WWZ4
Clinical trialABCA10
Miscellaneous
canSAR (ICR)ABCA10
HarmonizomeABCA10
DataMed IndexABCA10
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXABCA10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 14:57:58 CEST 2021

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