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ABCA11P (ATP binding cassette subfamily A member 11, pseudogene)

Identity

Alias_namesABCA11
ATP-binding cassette, sub-family A (ABC1), member 11, pseudogene
Alias_symbol (synonym)EST1133530
FLJ14297
Other alias
HGNC (Hugo) ABCA11P
LocusID (NCBI) 79963
Atlas_Id 60028
Location 4p16.3  [Link to chromosome band 4p16]
Location_base_pair Starts at 425435 and ends at 474129 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ABCA11P (4p16.3) / CRLS1 (20p12.3)ABCA11P (4p16.3) / UBXN4 (2q21.3)ATP5I (4p16.3) / ABCA11P (4p16.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ABCA11P   31
Cards
Entrez_Gene (NCBI)ABCA11P  79963  ATP binding cassette subfamily A member 11, pseudogene
AliasesABCA11; EST1133530
GeneCards (Weizmann)ABCA11P
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:425435-474129 [Contig_View]  ABCA11P [Vega]
TCGA cBioPortalABCA11P
AceView (NCBI)ABCA11P
Genatlas (Paris)ABCA11P
WikiGenes79963
SOURCE (Princeton)ABCA11P
Genetics Home Reference (NIH)ABCA11P
Genomic and cartography
GoldenPath hg38 (UCSC)ABCA11P  -     chr4:425435-474129 -  4p16.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABCA11P  -     4p16.3   [Description]    (hg19-Feb_2009)
EnsemblABCA11P - 4p16.3 [CytoView hg19]  ABCA11P - 4p16.3 [CytoView hg38]
Mapping of homologs : NCBIABCA11P [Mapview hg19]  ABCA11P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024359 AK303674 BC036795 BC040413 BC060316
RefSeq transcript (Entrez)NM_024903
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ABCA11P
Cluster EST : UnigeneHs.745030 [ NCBI ]
CGAP (NCI)Hs.745030
Gene ExpressionABCA11P [ NCBI-GEO ]   ABCA11P [ EBI - ARRAY_EXPRESS ]   ABCA11P [ SEEK ]   ABCA11P [ MEM ]
Gene Expression Viewer (FireBrowse)ABCA11P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79963
GTEX Portal (Tissue expression)ABCA11P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4W5N1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4W5N1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4W5N1
Splice isoforms : SwissVarQ4W5N1
PhosPhoSitePlusQ4W5N1
Domains : Interpro (EBI)ABC_A    ABC_transporter-like    P-loop_NTPase   
Domain families : Pfam (Sanger)ABC_tran (PF00005)   
Domain families : Pfam (NCBI)pfam00005   
Conserved Domain (NCBI)ABCA11P
DMDM Disease mutations79963
Blocks (Seattle)ABCA11P
SuperfamilyQ4W5N1
Peptide AtlasQ4W5N1
HPRD08597
IPIIPI00016509   
Protein Interaction databases
DIP (DOE-UCLA)Q4W5N1
IntAct (EBI)Q4W5N1
BioGRIDABCA11P
STRING (EMBL)ABCA11P
ZODIACABCA11P
Ontologies - Pathways
QuickGOQ4W5N1
Ontology : AmiGOATP binding  lipid transport  integral component of membrane  ATPase activity, coupled to transmembrane movement of substances  intracellular membrane-bounded organelle  transmembrane transport  
Ontology : EGO-EBIATP binding  lipid transport  integral component of membrane  ATPase activity, coupled to transmembrane movement of substances  intracellular membrane-bounded organelle  transmembrane transport  
NDEx NetworkABCA11P
Atlas of Cancer Signalling NetworkABCA11P
Wikipedia pathwaysABCA11P
Orthology - Evolution
OrthoDB79963
Phylogenetic Trees/Animal Genes : TreeFamABCA11P
HOVERGENQ4W5N1
HOGENOMQ4W5N1
Homologs : HomoloGeneABCA11P
Homology/Alignments : Family Browser (UCSC)ABCA11P
Gene fusions - Rearrangements
Tumor Fusion PortalABCA11P
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABCA11P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABCA11P
dbVarABCA11P
ClinVarABCA11P
1000_GenomesABCA11P 
Exome Variant ServerABCA11P
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP79963
Genomic Variants (DGV)ABCA11P [DGVbeta]
DECIPHERABCA11P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisABCA11P 
Mutations
ICGC Data PortalABCA11P 
TCGA Data PortalABCA11P 
Broad Tumor PortalABCA11P
OASIS PortalABCA11P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDABCA11P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ABCA11P
DgiDB (Drug Gene Interaction Database)ABCA11P
DoCM (Curated mutations)ABCA11P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABCA11P (select a term)
intoGenABCA11P
Cancer3DABCA11P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETABCA11P
MedgenABCA11P
Genetic Testing Registry ABCA11P
NextProtQ4W5N1 [Medical]
TSGene79963
GENETestsABCA11P
Target ValidationABCA11P
Huge Navigator ABCA11P [HugePedia]
snp3D : Map Gene to Disease79963
BioCentury BCIQABCA11P
ClinGenABCA11P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79963
Chemical/Pharm GKB GenePA24375
Clinical trialABCA11P
Miscellaneous
canSAR (ICR)ABCA11P (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABCA11P
EVEXABCA11P
GoPubMedABCA11P
iHOPABCA11P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:09:32 CET 2017

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