Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ABCA13 (ATP binding cassette subfamily A member 13)

Identity

Alias_namesATP-binding cassette
Alias_symbol (synonym)FLJ33876
FLJ33951
Other alias-
HGNC (Hugo) ABCA13
LocusID (NCBI) 154664
Atlas_Id 55613
Location 7p12.3  [Link to chromosome band 7p12]
Location_base_pair Starts at 48211057 and ends at 48687091 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ABCA13 (7p12.3) / ABCA13 (7p12.3)ABCA13 (7p12.3) / VEPH1 (3q25.31)ALOX5 (10q11.21) / ABCA13 (7p12.3)
C2CD3 (11q13.4) / ABCA13 (7p12.3)IKZF1 (7p12.2) / ABCA13 (7p12.3)KIAA1324L (7q21.12) / ABCA13 (7p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ABCA13   14638
Cards
Entrez_Gene (NCBI)ABCA13  154664  ATP binding cassette subfamily A member 13
Aliases
GeneCards (Weizmann)ABCA13
Ensembl hg19 (Hinxton)ENSG00000179869 [Gene_View]  chr7:48211057-48687091 [Contig_View]  ABCA13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000179869 [Gene_View]  chr7:48211057-48687091 [Contig_View]  ABCA13 [Vega]
ICGC DataPortalENSG00000179869
TCGA cBioPortalABCA13
AceView (NCBI)ABCA13
Genatlas (Paris)ABCA13
WikiGenes154664
SOURCE (Princeton)ABCA13
Genetics Home Reference (NIH)ABCA13
Genomic and cartography
GoldenPath hg19 (UCSC)ABCA13  -     chr7:48211057-48687091 +  7p12.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ABCA13  -     7p12.3   [Description]    (hg38-Dec_2013)
EnsemblABCA13 - 7p12.3 [CytoView hg19]  ABCA13 - 7p12.3 [CytoView hg38]
Mapping of homologs : NCBIABCA13 [Mapview hg19]  ABCA13 [Mapview hg38]
OMIM607807   
Gene and transcription
Genbank (Entrez)AF501281 AK091195 AK091270 AK126220 AK128516
RefSeq transcript (Entrez)NM_152701
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_012385 NT_007819 NW_004929329
Consensus coding sequences : CCDS (NCBI)ABCA13
Cluster EST : UnigeneHs.745575 [ NCBI ]
CGAP (NCI)Hs.745575
Alternative Splicing GalleryENSG00000179869
Gene ExpressionABCA13 [ NCBI-GEO ]   ABCA13 [ EBI - ARRAY_EXPRESS ]   ABCA13 [ SEEK ]   ABCA13 [ MEM ]
Gene Expression Viewer (FireBrowse)ABCA13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)154664
GTEX Portal (Tissue expression)ABCA13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UQ4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UQ4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UQ4
Splice isoforms : SwissVarQ86UQ4
PhosPhoSitePlusQ86UQ4
Domaine pattern : Prosite (Expaxy)ABC_TRANSPORTER_2 (PS50893)   
Domains : Interpro (EBI)AAA+_ATPase    ABC_A    ABC_transporter-like    P-loop_NTPase   
Domain families : Pfam (Sanger)ABC_tran (PF00005)   
Domain families : Pfam (NCBI)pfam00005   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)ABCA13
DMDM Disease mutations154664
Blocks (Seattle)ABCA13
SuperfamilyQ86UQ4
Human Protein AtlasENSG00000179869
Peptide AtlasQ86UQ4
HPRD07422
IPIIPI00328762   IPI00795748   IPI00791517   IPI00925372   IPI00925805   
Protein Interaction databases
DIP (DOE-UCLA)Q86UQ4
IntAct (EBI)Q86UQ4
FunCoupENSG00000179869
BioGRIDABCA13
STRING (EMBL)ABCA13
ZODIACABCA13
Ontologies - Pathways
QuickGOQ86UQ4
Ontology : AmiGOATP binding  metabolic process  integral component of membrane  cholesterol efflux  phospholipid efflux  ATPase activity, coupled to transmembrane movement of substances  intracellular membrane-bounded organelle  transmembrane transport  
Ontology : EGO-EBIATP binding  metabolic process  integral component of membrane  cholesterol efflux  phospholipid efflux  ATPase activity, coupled to transmembrane movement of substances  intracellular membrane-bounded organelle  transmembrane transport  
Pathways : KEGGABC transporters   
NDEx NetworkABCA13
Atlas of Cancer Signalling NetworkABCA13
Wikipedia pathwaysABCA13
Orthology - Evolution
OrthoDB154664
GeneTree (enSembl)ENSG00000179869
Phylogenetic Trees/Animal Genes : TreeFamABCA13
HOVERGENQ86UQ4
HOGENOMQ86UQ4
Homologs : HomoloGeneABCA13
Homology/Alignments : Family Browser (UCSC)ABCA13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABCA13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABCA13
dbVarABCA13
ClinVarABCA13
1000_GenomesABCA13 
Exome Variant ServerABCA13
ExAC (Exome Aggregation Consortium)ABCA13 (select the gene name)
Genetic variants : HAPMAP154664
Genomic Variants (DGV)ABCA13 [DGVbeta]
DECIPHER (Syndromes)7:48211057-48687091  ENSG00000179869
CONAN: Copy Number AnalysisABCA13 
Mutations
ICGC Data PortalABCA13 
TCGA Data PortalABCA13 
Broad Tumor PortalABCA13
OASIS PortalABCA13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICABCA13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDABCA13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ABCA13
DgiDB (Drug Gene Interaction Database)ABCA13
DoCM (Curated mutations)ABCA13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABCA13 (select a term)
intoGenABCA13
Cancer3DABCA13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607807   
Orphanet
MedgenABCA13
Genetic Testing Registry ABCA13
NextProtQ86UQ4 [Medical]
TSGene154664
GENETestsABCA13
Huge Navigator ABCA13 [HugePedia]
snp3D : Map Gene to Disease154664
BioCentury BCIQABCA13
ClinGenABCA13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD154664
Chemical/Pharm GKB GenePA134925234
Clinical trialABCA13
Miscellaneous
canSAR (ICR)ABCA13 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABCA13
EVEXABCA13
GoPubMedABCA13
iHOPABCA13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:54:24 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.