ABCA2 (ATP binding cassette subfamily A member 2)

2011-02-01  

Identity

HGNC
ABCA2
LOCATION
9q34.3
LOCUSID
20
ALIAS
ABC2,IDPOGSA
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 20
MIM: 600047
HGNC: 32
Ensembl: ENSG00000107331

Variants:

dbSNP: 20
ClinVar: 20
TCGA: ENSG00000107331
COSMIC: ABCA2

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000107331ENST00000265662J3QSS3
ENSG00000107331ENST00000341511Q9BZC7
ENSG00000107331ENST00000371605Q9BZC7
ENSG00000107331ENST00000470535H7C5M6
ENSG00000107331ENST00000479446H0Y8D6
ENSG00000107331ENST00000487109E9PGB2
ENSG00000107331ENST00000488535H0Y8C9
ENSG00000107331ENST00000490486H0Y8E3
ENSG00000107331ENST00000614293A0A087WXK5
ENSG00000107331ENST00000625103A0A096LP90

Expression (GTEx)

0
50
100
150
200
250
300
350
400
450
500
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Pathways

PathwaySourceExternal ID
ABC transportersKEGGko02010
ABC transportersKEGGhsa02010
LysosomeKEGGko04142
LysosomeKEGGhsa04142
Transmembrane transport of small moleculesREACTOMER-HSA-382551
ABC-family proteins mediated transportREACTOMER-HSA-382556
ABC transporters in lipid homeostasisREACTOMER-HSA-1369062

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
adipose tissue
skin 1
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
199131212009Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip.85
217070712011Transcriptomic and quantitative proteomic analysis of transporters and drug metabolizing enzymes in freshly isolated human brain microvessels.85
156497022005ABCA2 is a strong genetic risk factor for early-onset Alzheimer's disease.29
151555652004Association of ABCA2 expression with determinants of Alzheimer's disease.22
167523602006Ethnicity-dependent genetic association of ABCA2 with sporadic Alzheimer's disease.22
167523602006Ethnicity-dependent genetic association of ABCA2 with sporadic Alzheimer's disease.22
241451402014mRNA expression profile of multidrug-resistant genes in acute lymphoblastic leukemia of children, a prognostic value for ABCA3 and ABCA2.19
220869262012Down-regulation of the ATP-binding cassette transporter 2 (Abca2) reduces amyloid-β production by altering Nicastrin maturation and intracellular localization.17
201675772010Analysis of lipid pathway genes indicates association of sequence variation near SREBF1/TOM1L2/ATPAF2 with dementia risk.16
207045612010The ATP-binding cassette transporter-2 (ABCA2) increases endogenous amyloid precursor protein expression and Aβ fragment generation.15

Citation

Dessen P

ABCA2 (ATP binding cassette subfamily A member 2)

Atlas Genet Cytogenet Oncol Haematol. 2011-02-01

Online version: http://atlasgeneticsoncology.org/gene/52071/abca2