ABCB5 (ATP-binding cassette, sub-family B (MDR/TAP), member 5)

Identity

Other names	ABCB5alpha
	ABCB5beta
	EST422562
HGNC	ABCB5
Location	7p14
Location_base_pair	Starts at 20653741 and ends at 20761821 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	ABCB5   46
Entrez_Gene	ABCB5  340273  ATP-binding cassette, sub-family B (MDR/TAP), member 5
	Cards
GeneCards	ABCB5
Ensembl	ABCB5 [Search_View]   ENSG00000004846 [Gene_View]
Genatlas	ABCB5
GeneLynx	ABCB5
eGenome	ABCB5
euGene	340273
	Genomic and cartography
GoldenPath	ABCB5  -  7p14   chr7:20653741-20761821 +  7p15.3   [Description]    (hg18-March_2006)
Ensembl	ABCB5 - 7p15.3 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	ABCB5
	Gene and transcription
Genbank	AB353947 [ ENTREZ ]
Genbank	AF319622 [ ENTREZ ]
Genbank	AF399931 [ ENTREZ ]
Genbank	AK127141 [ ENTREZ ]
Genbank	AY090613 [ ENTREZ ]
RefSeq	NM_178559 [ SRS ]    NM_178559 [ ENTREZ ]
RefSeq	AC_000050 [ SRS ]    AC_000050 [ ENTREZ ]
RefSeq	AC_000068 [ SRS ]    AC_000068 [ ENTREZ ]
RefSeq	AC_000139 [ SRS ]    AC_000139 [ ENTREZ ]
RefSeq	NC_000007 [ SRS ]    NC_000007 [ ENTREZ ]
RefSeq	NT_007819 [ SRS ]    NT_007819 [ ENTREZ ]
RefSeq	NT_079592 [ SRS ]    NT_079592 [ ENTREZ ]
RefSeq	NW_001839003 [ SRS ]    NW_001839003 [ ENTREZ ]
RefSeq	NW_923240 [ SRS ]    NW_923240 [ ENTREZ ]
AceView	ABCB5 AceView - NCBI
Unigene	Hs.658821 [ SRS ]    Hs.658821 [ NCBI ]     HS658821 [ spliceNest ]
Fast-db	2429 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q2M3G0 [ SRS]    Q2M3G0 [ EXPASY ]     Q2M3G0 [ INTERPRO ]     Q2M3G0 [ UNIPROT ]
Prosite	PS50929 ABC_TM1F [ SRS ]    PS50929 ABC_TM1F [ Expasy ]
Prosite	PS00211 ABC_TRANSPORTER_1 [ SRS ]    PS00211 ABC_TRANSPORTER_1 [ Expasy ]
Prosite	PS50893 ABC_TRANSPORTER_2 [ SRS ]    PS50893 ABC_TRANSPORTER_2 [ Expasy ]
Interpro	IPR003593 AAA+_ATPase_core [ SRS ]    IPR003593 AAA+_ATPase_core [ EBI ]
Interpro	IPR011527 ABC_TM_1 [ SRS ]    IPR011527 ABC_TM_1 [ EBI ]
Interpro	IPR001140 ABC_TM_transpt [ SRS ]    IPR001140 ABC_TM_transpt [ EBI ]
Interpro	IPR003439 ABC_transporter-like [ SRS ]    IPR003439 ABC_transporter-like [ EBI ]
CluSTr	Q2M3G0
Pfam	PF00664 ABC_membrane [ SRS ]    PF00664 ABC_membrane [ Sanger ]    pfam00664 [ NCBI-CDD ]
Pfam	PF00005 ABC_tran [ SRS ]    PF00005 ABC_tran [ Sanger ]    pfam00005 [ NCBI-CDD ]
Smart	SM00382 AAA [EMBL]
Prodom	PD000006 ABC_transporter[INRA-Toulouse]
Prodom	Q2M3G0 ABCB5_HUMAN [ Domain structure ]   Q2M3G0 ABCB5_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	Q2M3G0
	Protein Interaction databases
DIP	Q2M3G0
IntAct	Q2M3G0
	Polymorphism : SNP, mutations, diseases
OMIM	611785    [ map ]
GENECLINICS	611785
SNP	ABCB5 [dbSNP-NCBI]
SNP	NM_178559 [SNP-NCI]
SNP	ABCB5 [GeneSNPs - Utah]  ABCB5] [HGBASE - SRS]
HAPMAP	ABCB5 [HAPMAP]
HGMD	ABCB5
	General knowledge
Family Browser	ABCB5 [UCSC Family Browser]
SOURCE	NM_178559
SMD	Hs.658821
SAGE	Hs.658821
GO	nucleotide binding [Amigo]  nucleotide binding
GO	ATP binding [Amigo]  ATP binding
GO	plasma membrane [Amigo]  plasma membrane
GO	transport [Amigo]  transport
GO	integral to membrane [Amigo]  integral to membrane
GO	ATPase activity [Amigo]  ATPase activity
GO	ATPase activity, coupled to transmembrane movement of substances [Amigo]  ATPase activity, coupled to transmembrane movement of substances
PubGene	ABCB5
TreeFam	ABCB5
CTD	340273 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	ABCB5 Related clones (RZPD - Berlin)
	PubMed
PubMed	11 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Tue Oct 14 20:18:58 2008