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ABCB9 (ATP binding cassette subfamily B member 9)

Identity

Alias (NCBI)EST122234
TAPL
HGNC (Hugo) ABCB9
HGNC Alias symbEST122234
HGNC Previous nameATP-binding cassette, sub-family B (MDR/TAP), member 9
LocusID (NCBI) 23457
Atlas_Id 50059
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 122924524 and ends at 122966463 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ABCB9 (12q24.31) / MPHOSPH9 (12q24.31)ZDHHC7 (16q24.1) / ABCB9 (12q24.31)ABCB9 12q24.31 / MPHOSPH9 12q24.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ABCB9   50
Cards
Entrez_Gene (NCBI)ABCB9    ATP binding cassette subfamily B member 9
AliasesEST122234; TAPL
GeneCards (Weizmann)ABCB9
Ensembl hg19 (Hinxton)ENSG00000150967 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150967 [Gene_View]  ENSG00000150967 [Sequence]  chr12:122924524-122966463 [Contig_View]  ABCB9 [Vega]
ICGC DataPortalENSG00000150967
TCGA cBioPortalABCB9
AceView (NCBI)ABCB9
Genatlas (Paris)ABCB9
SOURCE (Princeton)ABCB9
Genetics Home Reference (NIH)ABCB9
Genomic and cartography
GoldenPath hg38 (UCSC)ABCB9  -     chr12:122924524-122966463 -  12q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABCB9  -     12q24.31   [Description]    (hg19-Feb_2009)
GoldenPathABCB9 - 12q24.31 [CytoView hg19]  ABCB9 - 12q24.31 [CytoView hg38]
ImmunoBaseENSG00000150967
Genome Data Viewer NCBIABCB9 [Mapview hg19]  
OMIM605453   
Gene and transcription
Genbank (Entrez)AB040953 AB045381 AB112582 AB112583 AB177852
RefSeq transcript (Entrez)NM_001243013 NM_001243014 NM_019624 NM_019625 NM_203444 NM_203445
Consensus coding sequences : CCDS (NCBI)ABCB9
Gene ExpressionABCB9 [ NCBI-GEO ]   ABCB9 [ EBI - ARRAY_EXPRESS ]   ABCB9 [ SEEK ]   ABCB9 [ MEM ]
Gene Expression Viewer (FireBrowse)ABCB9 [ Firebrowse - Broad ]
GenevisibleExpression of ABCB9 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23457
GTEX Portal (Tissue expression)ABCB9
Human Protein AtlasENSG00000150967-ABCB9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NP78   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NP78  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NP78
PhosPhoSitePlusQ9NP78
Domaine pattern : Prosite (Expaxy)ABC_TM1F (PS50929)    ABC_TRANSPORTER_1 (PS00211)    ABC_TRANSPORTER_2 (PS50893)   
Domains : Interpro (EBI)AAA+_ATPase    ABC1_TM_dom    ABC1_TM_sf    ABC_transporter-like    ABC_transporter_CS    ABCB9    P-loop_NTPase    Type_I_exporter   
Domain families : Pfam (Sanger)ABC_membrane (PF00664)    ABC_tran (PF00005)   
Domain families : Pfam (NCBI)pfam00664    pfam00005   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)ABCB9
SuperfamilyQ9NP78
AlphaFold pdb e-kbQ9NP78   
Human Protein Atlas [tissue]ENSG00000150967-ABCB9 [tissue]
HPRD09262
Protein Interaction databases
DIP (DOE-UCLA)Q9NP78
IntAct (EBI)Q9NP78
BioGRIDABCB9
STRING (EMBL)ABCB9
ZODIACABCB9
Ontologies - Pathways
QuickGOQ9NP78
Ontology : AmiGOantigen processing and presentation of peptide antigen via MHC class I  protein binding  ATP binding  lysosome  lysosomal membrane  lysosomal membrane  lysosomal membrane  early endosome  endoplasmic reticulum  endoplasmic reticulum membrane  peptide metabolic process  protein transport  ABC-type oligopeptide transporter activity  ABC-type peptide antigen transporter activity  ABC-type peptide transporter activity  ABC-type peptide transporter activity  peptide transport  peptide transport  integral component of membrane  integral component of membrane  antigen processing and presentation of endogenous peptide antigen via MHC class I  transmembrane transporter activity  integral component of endoplasmic reticulum membrane  oligopeptide transmembrane transport  MHC class I protein binding  ATPase-coupled transmembrane transporter activity  protein homodimerization activity  protein homodimerization activity  MHC class I peptide loading complex  intracellular membrane-bounded organelle  TAP1 binding  transmembrane transport  transmembrane transport  
Ontology : EGO-EBIantigen processing and presentation of peptide antigen via MHC class I  protein binding  ATP binding  lysosome  lysosomal membrane  lysosomal membrane  lysosomal membrane  early endosome  endoplasmic reticulum  endoplasmic reticulum membrane  peptide metabolic process  protein transport  ABC-type oligopeptide transporter activity  ABC-type peptide antigen transporter activity  ABC-type peptide transporter activity  ABC-type peptide transporter activity  peptide transport  peptide transport  integral component of membrane  integral component of membrane  antigen processing and presentation of endogenous peptide antigen via MHC class I  transmembrane transporter activity  integral component of endoplasmic reticulum membrane  oligopeptide transmembrane transport  MHC class I protein binding  ATPase-coupled transmembrane transporter activity  protein homodimerization activity  protein homodimerization activity  MHC class I peptide loading complex  intracellular membrane-bounded organelle  TAP1 binding  transmembrane transport  transmembrane transport  
Pathways : KEGGABC transporters    Lysosome   
NDEx NetworkABCB9
Atlas of Cancer Signalling NetworkABCB9
Wikipedia pathwaysABCB9
Orthology - Evolution
OrthoDB23457
GeneTree (enSembl)ENSG00000150967
Phylogenetic Trees/Animal Genes : TreeFamABCB9
Homologs : HomoloGeneABCB9
Homology/Alignments : Family Browser (UCSC)ABCB9
Gene fusions - Rearrangements
Fusion : MitelmanABCB9/MPHOSPH9 [12q24.31/12q24.31]  
Fusion : MitelmanZDHHC7/ABCB9 [16q24.1/12q24.31]  
Fusion : QuiverABCB9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABCB9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABCB9
dbVarABCB9
ClinVarABCB9
MonarchABCB9
1000_GenomesABCB9 
Exome Variant ServerABCB9
GNOMAD BrowserENSG00000150967
Varsome BrowserABCB9
ACMGABCB9 variants
VarityQ9NP78
Genomic Variants (DGV)ABCB9 [DGVbeta]
DECIPHERABCB9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisABCB9 
Mutations
ICGC Data PortalABCB9 
TCGA Data PortalABCB9 
Broad Tumor PortalABCB9
OASIS PortalABCB9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICABCB9  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DABCB9
Mutations and Diseases : HGMDABCB9
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaABCB9
DgiDB (Drug Gene Interaction Database)ABCB9
DoCM (Curated mutations)ABCB9
CIViC (Clinical Interpretations of Variants in Cancer)ABCB9
Cancer3DABCB9
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605453   
Orphanet
DisGeNETABCB9
MedgenABCB9
Genetic Testing Registry ABCB9
NextProtQ9NP78 [Medical]
GENETestsABCB9
Target ValidationABCB9
Huge Navigator ABCB9 [HugePedia]
ClinGenABCB9
Clinical trials, drugs, therapy
MyCancerGenomeABCB9
Protein Interactions : CTDABCB9
Pharm GKB GenePA24391
PharosQ9NP78
Clinical trialABCB9
Miscellaneous
canSAR (ICR)ABCB9
HarmonizomeABCB9
DataMed IndexABCB9
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXABCB9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 14:58:01 CEST 2021

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