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ABCB9 (ATP binding cassette subfamily B member 9)

Identity

Alias_namesATP-binding cassette
Alias_symbol (synonym)EST122234
Other aliasTAPL
HGNC (Hugo) ABCB9
LocusID (NCBI) 23457
Atlas_Id 50059
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 122928992 and ends at 122966509 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ABCB9 (12q24.31) / MPHOSPH9 (12q24.31)ZDHHC7 (16q24.1) / ABCB9 (12q24.31)ABCB9 12q24.31 / MPHOSPH9 12q24.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Prostate tumors: an overview


External links

Nomenclature
HGNC (Hugo)ABCB9   50
Cards
Entrez_Gene (NCBI)ABCB9  23457  ATP binding cassette subfamily B member 9
AliasesEST122234; TAPL
GeneCards (Weizmann)ABCB9
Ensembl hg19 (Hinxton)ENSG00000150967 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000150967 [Gene_View]  chr12:122928992-122966509 [Contig_View]  ABCB9 [Vega]
ICGC DataPortalENSG00000150967
TCGA cBioPortalABCB9
AceView (NCBI)ABCB9
Genatlas (Paris)ABCB9
WikiGenes23457
SOURCE (Princeton)ABCB9
Genetics Home Reference (NIH)ABCB9
Genomic and cartography
GoldenPath hg38 (UCSC)ABCB9  -     chr12:122928992-122966509 -  12q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABCB9  -     12q24.31   [Description]    (hg19-Feb_2009)
EnsemblABCB9 - 12q24.31 [CytoView hg19]  ABCB9 - 12q24.31 [CytoView hg38]
Mapping of homologs : NCBIABCB9 [Mapview hg19]  ABCB9 [Mapview hg38]
OMIM605453   
Gene and transcription
Genbank (Entrez)AB040953 AB045381 AB112582 AB112583 AB177852
RefSeq transcript (Entrez)NM_001243013 NM_001243014 NM_019624 NM_019625 NM_203444 NM_203445
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ABCB9
Cluster EST : UnigeneHs.511951 [ NCBI ]
CGAP (NCI)Hs.511951
Alternative Splicing GalleryENSG00000150967
Gene ExpressionABCB9 [ NCBI-GEO ]   ABCB9 [ EBI - ARRAY_EXPRESS ]   ABCB9 [ SEEK ]   ABCB9 [ MEM ]
Gene Expression Viewer (FireBrowse)ABCB9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23457
GTEX Portal (Tissue expression)ABCB9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NP78   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NP78  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NP78
Splice isoforms : SwissVarQ9NP78
PhosPhoSitePlusQ9NP78
Domaine pattern : Prosite (Expaxy)ABC_TM1F (PS50929)    ABC_TRANSPORTER_1 (PS00211)    ABC_TRANSPORTER_2 (PS50893)   
Domains : Interpro (EBI)AAA+_ATPase    ABC1_TM_dom    ABC_transporter-like    ABC_transporter_CS    ABCB9    P-loop_NTPase   
Domain families : Pfam (Sanger)ABC_membrane (PF00664)    ABC_tran (PF00005)   
Domain families : Pfam (NCBI)pfam00664    pfam00005   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)ABCB9
DMDM Disease mutations23457
Blocks (Seattle)ABCB9
SuperfamilyQ9NP78
Human Protein AtlasENSG00000150967
Peptide AtlasQ9NP78
HPRD09262
IPIIPI00418359   IPI00216589   IPI00301976   IPI00910516   IPI01014085   IPI00939733   IPI01010415   IPI01014873   IPI01012484   IPI01013253   IPI00939243   IPI01011213   IPI01009494   IPI01010767   IPI01015357   IPI01025080   IPI01018683   
Protein Interaction databases
DIP (DOE-UCLA)Q9NP78
IntAct (EBI)Q9NP78
FunCoupENSG00000150967
BioGRIDABCB9
STRING (EMBL)ABCB9
ZODIACABCB9
Ontologies - Pathways
QuickGOQ9NP78
Ontology : AmiGOantigen processing and presentation of peptide antigen via MHC class I  protein binding  ATP binding  lysosome  lysosomal membrane  lysosomal membrane  early endosome  endoplasmic reticulum  protein transport  oligopeptide-transporting ATPase activity  peptide-transporting ATPase activity  peptide transport  integral component of membrane  substrate-specific transmembrane transporter activity  integral component of endoplasmic reticulum membrane  oligopeptide transmembrane transport  protein homodimerization activity  protein homodimerization activity  intracellular membrane-bounded organelle  transmembrane transport  
Ontology : EGO-EBIantigen processing and presentation of peptide antigen via MHC class I  protein binding  ATP binding  lysosome  lysosomal membrane  lysosomal membrane  early endosome  endoplasmic reticulum  protein transport  oligopeptide-transporting ATPase activity  peptide-transporting ATPase activity  peptide transport  integral component of membrane  substrate-specific transmembrane transporter activity  integral component of endoplasmic reticulum membrane  oligopeptide transmembrane transport  protein homodimerization activity  protein homodimerization activity  intracellular membrane-bounded organelle  transmembrane transport  
Pathways : KEGGABC transporters    Lysosome   
NDEx NetworkABCB9
Atlas of Cancer Signalling NetworkABCB9
Wikipedia pathwaysABCB9
Orthology - Evolution
OrthoDB23457
GeneTree (enSembl)ENSG00000150967
Phylogenetic Trees/Animal Genes : TreeFamABCB9
HOVERGENQ9NP78
HOGENOMQ9NP78
Homologs : HomoloGeneABCB9
Homology/Alignments : Family Browser (UCSC)ABCB9
Gene fusions - Rearrangements
Fusion : MitelmanABCB9/MPHOSPH9 [12q24.31/12q24.31]  
Fusion : MitelmanZDHHC7/ABCB9 [16q24.1/12q24.31]  [t(12;16)(q24;q24)]  
Fusion: TCGAABCB9 12q24.31 MPHOSPH9 12q24.31 HNSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABCB9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABCB9
dbVarABCB9
ClinVarABCB9
1000_GenomesABCB9 
Exome Variant ServerABCB9
ExAC (Exome Aggregation Consortium)ABCB9 (select the gene name)
Genetic variants : HAPMAP23457
Genomic Variants (DGV)ABCB9 [DGVbeta]
DECIPHERABCB9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisABCB9 
Mutations
ICGC Data PortalABCB9 
TCGA Data PortalABCB9 
Broad Tumor PortalABCB9
OASIS PortalABCB9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICABCB9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDABCB9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ABCB9
DgiDB (Drug Gene Interaction Database)ABCB9
DoCM (Curated mutations)ABCB9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABCB9 (select a term)
intoGenABCB9
Cancer3DABCB9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605453   
Orphanet
MedgenABCB9
Genetic Testing Registry ABCB9
NextProtQ9NP78 [Medical]
TSGene23457
GENETestsABCB9
Huge Navigator ABCB9 [HugePedia]
snp3D : Map Gene to Disease23457
BioCentury BCIQABCB9
ClinGenABCB9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23457
Chemical/Pharm GKB GenePA24391
Clinical trialABCB9
Miscellaneous
canSAR (ICR)ABCB9 (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABCB9
EVEXABCB9
GoPubMedABCB9
iHOPABCB9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:04:33 CEST 2017

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