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ABCC12 (ATP binding cassette subfamily C member 12)

Identity

Alias_namesATP-binding cassette, sub-family C (CFTR/MRP), member 12
Alias_symbol (synonym)MRP9
Other alias
HGNC (Hugo) ABCC12
LocusID (NCBI) 94160
Atlas_Id 60036
Location 16q12.1  [Link to chromosome band 16q12]
Location_base_pair Starts at 48082973 and ends at 48146770 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ABCC12   14640
Cards
Entrez_Gene (NCBI)ABCC12  94160  ATP binding cassette subfamily C member 12
AliasesMRP9
GeneCards (Weizmann)ABCC12
Ensembl hg19 (Hinxton)ENSG00000140798 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140798 [Gene_View]  chr16:48082973-48146770 [Contig_View]  ABCC12 [Vega]
ICGC DataPortalENSG00000140798
TCGA cBioPortalABCC12
AceView (NCBI)ABCC12
Genatlas (Paris)ABCC12
WikiGenes94160
SOURCE (Princeton)ABCC12
Genetics Home Reference (NIH)ABCC12
Genomic and cartography
GoldenPath hg38 (UCSC)ABCC12  -     chr16:48082973-48146770 -  16q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABCC12  -     16q12.1   [Description]    (hg19-Feb_2009)
EnsemblABCC12 - 16q12.1 [CytoView hg19]  ABCC12 - 16q12.1 [CytoView hg38]
Mapping of homologs : NCBIABCC12 [Mapview hg19]  ABCC12 [Mapview hg38]
OMIM607041   
Gene and transcription
Genbank (Entrez)AF395908 AF395909 AF411577 AF411578 AK122635
RefSeq transcript (Entrez)NM_033226 NM_145187 NM_145188 NM_145189 NM_145190
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ABCC12
Cluster EST : UnigeneHs.410111 [ NCBI ]
CGAP (NCI)Hs.410111
Alternative Splicing GalleryENSG00000140798
Gene ExpressionABCC12 [ NCBI-GEO ]   ABCC12 [ EBI - ARRAY_EXPRESS ]   ABCC12 [ SEEK ]   ABCC12 [ MEM ]
Gene Expression Viewer (FireBrowse)ABCC12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)94160
GTEX Portal (Tissue expression)ABCC12
Human Protein AtlasENSG00000140798-ABCC12 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96J65   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96J65  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96J65
Splice isoforms : SwissVarQ96J65
PhosPhoSitePlusQ96J65
Domaine pattern : Prosite (Expaxy)ABC_TM1F (PS50929)    ABC_TRANSPORTER_1 (PS00211)    ABC_TRANSPORTER_2 (PS50893)   
Domains : Interpro (EBI)AAA+_ATPase    ABC1_TM_dom    ABC_transporter-like    ABC_transporter_CS    MRP9    P-loop_NTPase   
Domain families : Pfam (Sanger)ABC_membrane (PF00664)    ABC_tran (PF00005)   
Domain families : Pfam (NCBI)pfam00664    pfam00005   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)ABCC12
DMDM Disease mutations94160
Blocks (Seattle)ABCC12
SuperfamilyQ96J65
Human Protein Atlas [tissue]ENSG00000140798-ABCC12 [tissue]
Peptide AtlasQ96J65
HPRD06128
IPIIPI00063878   IPI00375288   IPI00291897   IPI00796878   IPI00646809   IPI00978919   IPI00910793   IPI00978979   
Protein Interaction databases
DIP (DOE-UCLA)Q96J65
IntAct (EBI)Q96J65
FunCoupENSG00000140798
BioGRIDABCC12
STRING (EMBL)ABCC12
ZODIACABCC12
Ontologies - Pathways
QuickGOQ96J65
Ontology : AmiGOATP binding  mitochondrion  membrane  integral component of membrane  ATPase activity, coupled to transmembrane movement of substances  transmembrane transport  
Ontology : EGO-EBIATP binding  mitochondrion  membrane  integral component of membrane  ATPase activity, coupled to transmembrane movement of substances  transmembrane transport  
Pathways : KEGGABC transporters   
NDEx NetworkABCC12
Atlas of Cancer Signalling NetworkABCC12
Wikipedia pathwaysABCC12
Orthology - Evolution
OrthoDB94160
GeneTree (enSembl)ENSG00000140798
Phylogenetic Trees/Animal Genes : TreeFamABCC12
HOVERGENQ96J65
HOGENOMQ96J65
Homologs : HomoloGeneABCC12
Homology/Alignments : Family Browser (UCSC)ABCC12
Gene fusions - Rearrangements
Tumor Fusion PortalABCC12
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABCC12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABCC12
dbVarABCC12
ClinVarABCC12
1000_GenomesABCC12 
Exome Variant ServerABCC12
ExAC (Exome Aggregation Consortium)ENSG00000140798
GNOMAD BrowserENSG00000140798
Genetic variants : HAPMAP94160
Genomic Variants (DGV)ABCC12 [DGVbeta]
DECIPHERABCC12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisABCC12 
Mutations
ICGC Data PortalABCC12 
TCGA Data PortalABCC12 
Broad Tumor PortalABCC12
OASIS PortalABCC12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICABCC12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDABCC12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ABCC12
DgiDB (Drug Gene Interaction Database)ABCC12
DoCM (Curated mutations)ABCC12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABCC12 (select a term)
intoGenABCC12
Cancer3DABCC12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607041   
Orphanet
DisGeNETABCC12
MedgenABCC12
Genetic Testing Registry ABCC12
NextProtQ96J65 [Medical]
TSGene94160
GENETestsABCC12
Target ValidationABCC12
Huge Navigator ABCC12 [HugePedia]
snp3D : Map Gene to Disease94160
BioCentury BCIQABCC12
ClinGenABCC12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD94160
Chemical/Pharm GKB GenePA24394
Clinical trialABCC12
Miscellaneous
canSAR (ICR)ABCC12 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABCC12
EVEXABCC12
GoPubMedABCC12
iHOPABCC12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:32:46 CET 2017

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