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ABCC13 (ATP-binding cassette, sub-family C (CFTR/MRP), member 13, pseudogene)

Identity

Alias_namesATP-binding cassette, sub-family C (CFTR/MRP), member 13
Alias_symbol (synonym)PRED6
C21orf73
ABCC13P
Other alias
HGNC (Hugo) ABCC13
LocusID (NCBI) 150000
Atlas_Id 60037
Location 21q11.2  [Link to chromosome band 21q11]
Location_base_pair Starts at 15646120 and ends at 15710337 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ABCC13   16022
Cards
Entrez_Gene (NCBI)ABCC13  150000  ATP-binding cassette, sub-family C (CFTR/MRP), member 13, pseudogene
AliasesC21orf73; PRED6
GeneCards (Weizmann)ABCC13
Ensembl hg19 (Hinxton)ENSG00000243064 [Gene_View]  chr21:15646120-15710337 [Contig_View]  ABCC13 [Vega]
Ensembl hg38 (Hinxton)ENSG00000243064 [Gene_View]  chr21:15646120-15710337 [Contig_View]  ABCC13 [Vega]
ICGC DataPortalENSG00000243064
TCGA cBioPortalABCC13
AceView (NCBI)ABCC13
Genatlas (Paris)ABCC13
WikiGenes150000
SOURCE (Princeton)ABCC13
Genetics Home Reference (NIH)ABCC13
Genomic and cartography
GoldenPath hg19 (UCSC)ABCC13  -     chr21:15646120-15710337 +  21q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ABCC13  -     21q11.2   [Description]    (hg38-Dec_2013)
EnsemblABCC13 - 21q11.2 [CytoView hg19]  ABCC13 - 21q11.2 [CytoView hg38]
Mapping of homologs : NCBIABCC13 [Mapview hg19]  ABCC13 [Mapview hg38]
OMIM608835   
Gene and transcription
Genbank (Entrez)AF418600 AF518320 AF518321 AY063514 AY063515
RefSeq transcript (Entrez)NM_138726 NM_172024 NM_172025 NM_172026
RefSeq genomic (Entrez)NC_000021 NC_018932 NT_011512 NW_004929426
Consensus coding sequences : CCDS (NCBI)ABCC13
Cluster EST : UnigeneHs.366575 [ NCBI ]
CGAP (NCI)Hs.366575
Alternative Splicing GalleryENSG00000243064
Gene ExpressionABCC13 [ NCBI-GEO ]   ABCC13 [ EBI - ARRAY_EXPRESS ]   ABCC13 [ SEEK ]   ABCC13 [ MEM ]
Gene Expression Viewer (FireBrowse)ABCC13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)150000
GTEX Portal (Tissue expression)ABCC13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NSE7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NSE7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NSE7
Splice isoforms : SwissVarQ9NSE7
PhosPhoSitePlusQ9NSE7
Domaine pattern : Prosite (Expaxy)ABC_TM1F (PS50929)   
Domains : Interpro (EBI)ABC1_TM_dom   
Domain families : Pfam (Sanger)ABC_membrane (PF00664)   
Domain families : Pfam (NCBI)pfam00664   
Conserved Domain (NCBI)ABCC13
DMDM Disease mutations150000
Blocks (Seattle)ABCC13
SuperfamilyQ9NSE7
Human Protein AtlasENSG00000243064
Peptide AtlasQ9NSE7
HPRD10586
IPIIPI00025740   IPI00216009   IPI00216010   IPI00220831   IPI00172522   
Protein Interaction databases
DIP (DOE-UCLA)Q9NSE7
IntAct (EBI)Q9NSE7
FunCoupENSG00000243064
BioGRIDABCC13
STRING (EMBL)ABCC13
ZODIACABCC13
Ontologies - Pathways
QuickGOQ9NSE7
Ontology : AmiGOATP binding  integral component of membrane  ATPase activity, coupled to transmembrane movement of substances  transmembrane transport  
Ontology : EGO-EBIATP binding  integral component of membrane  ATPase activity, coupled to transmembrane movement of substances  transmembrane transport  
NDEx NetworkABCC13
Atlas of Cancer Signalling NetworkABCC13
Wikipedia pathwaysABCC13
Orthology - Evolution
OrthoDB150000
GeneTree (enSembl)ENSG00000243064
Phylogenetic Trees/Animal Genes : TreeFamABCC13
HOVERGENQ9NSE7
HOGENOMQ9NSE7
Homologs : HomoloGeneABCC13
Homology/Alignments : Family Browser (UCSC)ABCC13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABCC13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABCC13
dbVarABCC13
ClinVarABCC13
1000_GenomesABCC13 
Exome Variant ServerABCC13
ExAC (Exome Aggregation Consortium)ABCC13 (select the gene name)
Genetic variants : HAPMAP150000
Genomic Variants (DGV)ABCC13 [DGVbeta]
DECIPHER (Syndromes)21:15646120-15710337  ENSG00000243064
CONAN: Copy Number AnalysisABCC13 
Mutations
ICGC Data PortalABCC13 
TCGA Data PortalABCC13 
Broad Tumor PortalABCC13
OASIS PortalABCC13 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDABCC13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ABCC13
DgiDB (Drug Gene Interaction Database)ABCC13
DoCM (Curated mutations)ABCC13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABCC13 (select a term)
intoGenABCC13
Cancer3DABCC13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608835   
Orphanet
MedgenABCC13
Genetic Testing Registry ABCC13
NextProtQ9NSE7 [Medical]
TSGene150000
GENETestsABCC13
Huge Navigator ABCC13 [HugePedia]
snp3D : Map Gene to Disease150000
BioCentury BCIQABCC13
ClinGenABCC13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD150000
Chemical/Pharm GKB GenePA134875904
Clinical trialABCC13
Miscellaneous
canSAR (ICR)ABCC13 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABCC13
EVEXABCC13
GoPubMedABCC13
iHOPABCC13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:53:19 CET 2017

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