Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ABCC6P1 (ATP binding cassette subfamily C member 6 pseudogene 1)

Identity

Alias_namesATP-binding cassette, sub-family C, member 6 pseudogene 1
ATP-binding cassette, sub-family C, member 6 pseudogene 1 (functional)
ATP binding cassette subfamily C member 6 pseudogene 1 (functional)
Other alias-
HGNC (Hugo) ABCC6P1
LocusID (NCBI) 653190
Atlas_Id 60039
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 18571248 and ends at 18598285 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C16orf62 (16p12.3) / ABCC6P1 (16p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ABCC6P1   33352
Cards
Entrez_Gene (NCBI)ABCC6P1  653190  ATP binding cassette subfamily C member 6 pseudogene 1
Aliases
GeneCards (Weizmann)ABCC6P1
Ensembl hg19 (Hinxton)ENSG00000256340 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000256340 [Gene_View]  chr16:18571248-18598285 [Contig_View]  ABCC6P1 [Vega]
ICGC DataPortalENSG00000256340
TCGA cBioPortalABCC6P1
AceView (NCBI)ABCC6P1
Genatlas (Paris)ABCC6P1
WikiGenes653190
SOURCE (Princeton)ABCC6P1
Genetics Home Reference (NIH)ABCC6P1
Genomic and cartography
GoldenPath hg38 (UCSC)ABCC6P1  -     chr16:18571248-18598285 +  16p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABCC6P1  -     16p12.3   [Description]    (hg19-Feb_2009)
EnsemblABCC6P1 - 16p12.3 [CytoView hg19]  ABCC6P1 - 16p12.3 [CytoView hg38]
Mapping of homologs : NCBIABCC6P1 [Mapview hg19]  ABCC6P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK298443 BC075833
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ABCC6P1
Cluster EST : UnigeneHs.13188 [ NCBI ]
CGAP (NCI)Hs.13188
Alternative Splicing GalleryENSG00000256340
Gene ExpressionABCC6P1 [ NCBI-GEO ]   ABCC6P1 [ EBI - ARRAY_EXPRESS ]   ABCC6P1 [ SEEK ]   ABCC6P1 [ MEM ]
Gene Expression Viewer (FireBrowse)ABCC6P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)653190
GTEX Portal (Tissue expression)ABCC6P1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ABCC6P1
DMDM Disease mutations653190
Blocks (Seattle)ABCC6P1
Human Protein AtlasENSG00000256340
Protein Interaction databases
FunCoupENSG00000256340
BioGRIDABCC6P1
STRING (EMBL)ABCC6P1
ZODIACABCC6P1
Ontologies - Pathways
Huge Navigator ABCC6P1 [HugePedia]
snp3D : Map Gene to Disease653190
BioCentury BCIQABCC6P1
ClinGenABCC6P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653190
Clinical trialABCC6P1
Miscellaneous
canSAR (ICR)ABCC6P1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABCC6P1
EVEXABCC6P1
GoPubMedABCC6P1
iHOPABCC6P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:00:38 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.