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ABCC9 (ATP-binding cassette, sub-family C (CFTR/MRP), member 9)

Identity

Other namesABC37
ATFB12
CANTU
CMD1O
SUR2
HGNC (Hugo) ABCC9
LocusID (NCBI) 10060
Location 12p12.1
Location_base_pair Starts at 21958108 and ends at 22089628 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)ABCC9   60
Cards
Entrez_Gene (NCBI)ABCC9  10060  ATP-binding cassette, sub-family C (CFTR/MRP), member 9
GeneCards (Weizmann)ABCC9
Ensembl (Hinxton)ENSG00000069431 [Gene_View]  chr12:21958108-22089628 [Contig_View]  ABCC9 [Vega]
AceView (NCBI)ABCC9
Genatlas (Paris)ABCC9
WikiGenes10060
SOURCE (Princeton)NM_005691 NM_020297 NM_020298
Genomic and cartography
GoldenPath (UCSC)ABCC9  -  12p12.1   chr12:21958108-22089628 -  12p12.1   [Description]    (hg19-Feb_2009)
EnsemblABCC9 - 12p12.1 [CytoView]
Mapping of homologs : NCBIABCC9 [Mapview]
OMIM239850   601439   608569   614050   
Gene and transcription
Genbank (Entrez)AK056519 AK092535 AK094171 BC033804 BX537513
RefSeq transcript (Entrez)NM_005691 NM_020297 NM_020298
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NG_012819 NT_009714 NW_001838052 NW_004929383
Consensus coding sequences : CCDS (NCBI)ABCC9
Cluster EST : UnigeneHs.732701 [ NCBI ]
CGAP (NCI)Hs.732701
Alternative Splicing : Fast-db (Paris)GSHG0033830
Alternative Splicing GalleryENSG00000069431
Gene ExpressionABCC9 [ NCBI-GEO ]     ABCC9 [ SEEK ]   ABCC9 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60706 (Uniprot)
NextProtO60706  [Medical]
With graphics : InterProO60706
Splice isoforms : SwissVarO60706 (Swissvar)
Domaine pattern : Prosite (Expaxy)ABC_TM1F (PS50929)    ABC_TRANSPORTER_1 (PS00211)    ABC_TRANSPORTER_2 (PS50893)   
Domains : Interpro (EBI)AAA+_ATPase    ABC1_TM_dom    ABC_transporter-like    ABC_transporter_CS    ABC_transptr_TM_dom    P-loop_NTPase    Sulphonylurea_rcpt-2    Sulphorea_rcpt   
Related proteins : CluSTrO60706
Domain families : Pfam (Sanger)ABC_membrane (PF00664)    ABC_tran (PF00005)   
Domain families : Pfam (NCBI)pfam00664    pfam00005   
Domain families : Smart (EMBL)AAA (SM00382)  
DMDM Disease mutations10060
Blocks (Seattle)O60706
Human Protein AtlasENSG00000069431
Peptide AtlasO60706
HPRD03258
IPIIPI00024278   IPI00216251   IPI00025079   IPI00166732   IPI00792997   
Protein Interaction databases
DIP (DOE-UCLA)O60706
IntAct (EBI)O60706
FunCoupENSG00000069431
BioGRIDABCC9
InParanoidO60706
Interologous Interaction database O60706
IntegromeDBABCC9
STRING (EMBL)ABCC9
Ontologies - Pathways
Ontology : AmiGOtransporter activity  potassium channel activity  ATP binding  plasma membrane  potassium ion transport  synaptic transmission  voltage-gated potassium channel complex  sulfonylurea receptor activity  ATP-sensitive potassium channel complex  potassium ion import  potassium channel regulator activity  sarcomere  sarcolemma  ATPase activity, coupled to transmembrane movement of substances  ion channel binding  defense response to virus  transmembrane transport  
Ontology : EGO-EBItransporter activity  potassium channel activity  ATP binding  plasma membrane  potassium ion transport  synaptic transmission  voltage-gated potassium channel complex  sulfonylurea receptor activity  ATP-sensitive potassium channel complex  potassium ion import  potassium channel regulator activity  sarcomere  sarcolemma  ATPase activity, coupled to transmembrane movement of substances  ion channel binding  defense response to virus  transmembrane transport  
Pathways : KEGGABC transporters   
REACTOMEABCC9
Protein Interaction DatabaseABCC9
Wikipedia pathwaysABCC9
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ABCC9
SNP (GeneSNP Utah)ABCC9
SNP : HGBaseABCC9
Genetic variants : HAPMAPABCC9
1000_GenomesABCC9 
ICGC programENSG00000069431 
Somatic Mutations in Cancer : COSMICABCC9 
CONAN: Copy Number AnalysisABCC9 
Mutations and Diseases : HGMDABCC9
OMIM239850    601439    608569    614050   
GENETestsABCC9
Disease Genetic AssociationABCC9
Huge Navigator ABCC9 [HugePedia]  ABCC9 [HugeCancerGEM]
Genomic VariantsABCC9  ABCC9 [DGVbeta]
Exome VariantABCC9
dbVarABCC9
ClinVarABCC9
snp3D : Map Gene to Disease10060
General knowledge
Homologs : HomoloGeneABCC9
Homology/Alignments : Family Browser (UCSC)ABCC9
Phylogenetic Trees/Animal Genes : TreeFamABCC9
Chemical/Protein Interactions : CTD10060
Chemical/Pharm GKB GenePA396
Clinical trialABCC9
Cancer Resource (Charite)ENSG00000069431
Other databases
Probes
Litterature
PubMed53 Pubmed reference(s) in Entrez
CoreMineABCC9
iHOPABCC9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Apr 18 17:02:19 CEST 2014

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