Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ABCE1 (ATP binding cassette subfamily E member 1)

Identity

Alias_namesRNASEL1
RNASELI
RNS4I
ATP-binding cassette
Alias_symbol (synonym)RLI
OABP
RLI1
Other aliasABC38
HGNC (Hugo) ABCE1
LocusID (NCBI) 6059
Atlas_Id 45805
Location 4q31.21  [Link to chromosome band 4q31]
Location_base_pair Starts at 145098004 and ends at 145129524 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ABCE1 (4q31.21) / DDX39B (6p21.33)ABCE1 (4q31.21) / LOC100505666 (1q22)ABCE1 (4q31.21) / ZNF827 (4q31.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ABCE1   69
Cards
Entrez_Gene (NCBI)ABCE1  6059  ATP binding cassette subfamily E member 1
AliasesABC38; OABP; RLI; RLI1; 
RNASEL1; RNASELI; RNS4I
GeneCards (Weizmann)ABCE1
Ensembl hg19 (Hinxton)ENSG00000164163 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164163 [Gene_View]  chr4:145098004-145129524 [Contig_View]  ABCE1 [Vega]
ICGC DataPortalENSG00000164163
TCGA cBioPortalABCE1
AceView (NCBI)ABCE1
Genatlas (Paris)ABCE1
WikiGenes6059
SOURCE (Princeton)ABCE1
Genetics Home Reference (NIH)ABCE1
Genomic and cartography
GoldenPath hg38 (UCSC)ABCE1  -     chr4:145098004-145129524 +  4q31.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABCE1  -     4q31.21   [Description]    (hg19-Feb_2009)
EnsemblABCE1 - 4q31.21 [CytoView hg19]  ABCE1 - 4q31.21 [CytoView hg38]
Mapping of homologs : NCBIABCE1 [Mapview hg19]  ABCE1 [Mapview hg38]
OMIM601213   
Gene and transcription
Genbank (Entrez)AB062293 AK123593 AK315198 BC016283 BC016988
RefSeq transcript (Entrez)NM_001040876 NM_002940
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ABCE1
Cluster EST : UnigeneHs.12013 [ NCBI ]
CGAP (NCI)Hs.12013
Alternative Splicing GalleryENSG00000164163
Gene ExpressionABCE1 [ NCBI-GEO ]   ABCE1 [ EBI - ARRAY_EXPRESS ]   ABCE1 [ SEEK ]   ABCE1 [ MEM ]
Gene Expression Viewer (FireBrowse)ABCE1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6059
GTEX Portal (Tissue expression)ABCE1
Human Protein AtlasENSG00000164163-ABCE1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP61221   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP61221  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP61221
Splice isoforms : SwissVarP61221
PhosPhoSitePlusP61221
Domaine pattern : Prosite (Expaxy)4FE4S_FER_1 (PS00198)    4FE4S_FER_2 (PS51379)    ABC_TRANSPORTER_1 (PS00211)    ABC_TRANSPORTER_2 (PS50893)   
Domains : Interpro (EBI)4Fe4S_Fe-S-bd    4Fe4S_Fe_S_CS    AAA+_ATPase    ABC_transporter-like    ABC_transporter_CS    P-loop_NTPase    RLI1    RLI_dom_1    RNaseL-inhib_metal-bd_dom   
Domain families : Pfam (Sanger)ABC_tran (PF00005)    Fer4 (PF00037)    RLI (PF04068)   
Domain families : Pfam (NCBI)pfam00005    pfam00037    pfam04068   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)ABCE1
DMDM Disease mutations6059
Blocks (Seattle)ABCE1
SuperfamilyP61221
Human Protein Atlas [tissue]ENSG00000164163-ABCE1 [tissue]
Peptide AtlasP61221
HPRD03132
IPIIPI00303207   IPI00967118   IPI00967724   IPI00965314   
Protein Interaction databases
DIP (DOE-UCLA)P61221
IntAct (EBI)P61221
FunCoupENSG00000164163
BioGRIDABCE1
STRING (EMBL)ABCE1
ZODIACABCE1
Ontologies - Pathways
QuickGOP61221
Ontology : AmiGOribosomal subunit export from nucleus  iron ion binding  protein binding  ATP binding  cytoplasm  mitochondrion  mitochondrial matrix  cytosol  eukaryotic translation initiation factor 3 complex  translational initiation  translational termination  membrane  viral process  ATPase activity  ribosomal small subunit binding  transmembrane transport  endoribonuclease inhibitor activity  negative regulation of endoribonuclease activity  
Ontology : EGO-EBIribosomal subunit export from nucleus  iron ion binding  protein binding  ATP binding  cytoplasm  mitochondrion  mitochondrial matrix  cytosol  eukaryotic translation initiation factor 3 complex  translational initiation  translational termination  membrane  viral process  ATPase activity  ribosomal small subunit binding  transmembrane transport  endoribonuclease inhibitor activity  negative regulation of endoribonuclease activity  
NDEx NetworkABCE1
Atlas of Cancer Signalling NetworkABCE1
Wikipedia pathwaysABCE1
Orthology - Evolution
OrthoDB6059
GeneTree (enSembl)ENSG00000164163
Phylogenetic Trees/Animal Genes : TreeFamABCE1
HOVERGENP61221
HOGENOMP61221
Homologs : HomoloGeneABCE1
Homology/Alignments : Family Browser (UCSC)ABCE1
Gene fusions - Rearrangements
Tumor Fusion PortalABCE1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABCE1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABCE1
dbVarABCE1
ClinVarABCE1
1000_GenomesABCE1 
Exome Variant ServerABCE1
ExAC (Exome Aggregation Consortium)ENSG00000164163
GNOMAD BrowserENSG00000164163
Genetic variants : HAPMAP6059
Genomic Variants (DGV)ABCE1 [DGVbeta]
DECIPHERABCE1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisABCE1 
Mutations
ICGC Data PortalABCE1 
TCGA Data PortalABCE1 
Broad Tumor PortalABCE1
OASIS PortalABCE1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICABCE1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDABCE1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ABCE1
DgiDB (Drug Gene Interaction Database)ABCE1
DoCM (Curated mutations)ABCE1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABCE1 (select a term)
intoGenABCE1
Cancer3DABCE1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601213   
Orphanet
DisGeNETABCE1
MedgenABCE1
Genetic Testing Registry ABCE1
NextProtP61221 [Medical]
TSGene6059
GENETestsABCE1
Target ValidationABCE1
Huge Navigator ABCE1 [HugePedia]
snp3D : Map Gene to Disease6059
BioCentury BCIQABCE1
ClinGenABCE1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6059
Chemical/Pharm GKB GenePA24404
Clinical trialABCE1
Miscellaneous
canSAR (ICR)ABCE1 (select the gene name)
Probes
Litterature
PubMed68 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABCE1
EVEXABCE1
GoPubMedABCE1
iHOPABCE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:01:40 CET 2017

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