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ABCF2 (ATP binding cassette subfamily F member 2)

Identity

Alias_namesATP-binding cassette
Alias_symbol (synonym)EST133090
ABC28
M-ABC1
HUSSY-18
Other aliasHUSSY18
HGNC (Hugo) ABCF2
LocusID (NCBI) 10061
Atlas_Id 545
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 150904923 and ends at 150924460 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CDC42 (1p36.12) / ABCF2 (7q36.1)PIN4 (Xq13.1) / ABCF2 (7q36.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ABCF2   71
Cards
Entrez_Gene (NCBI)ABCF2  10061  ATP binding cassette subfamily F member 2
AliasesABC28; EST133090; HUSSY-18; HUSSY18
GeneCards (Weizmann)ABCF2
Ensembl hg19 (Hinxton)ENSG00000033050 [Gene_View]  chr7:150904923-150924460 [Contig_View]  ABCF2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000033050 [Gene_View]  chr7:150904923-150924460 [Contig_View]  ABCF2 [Vega]
ICGC DataPortalENSG00000033050
TCGA cBioPortalABCF2
AceView (NCBI)ABCF2
Genatlas (Paris)ABCF2
WikiGenes10061
SOURCE (Princeton)ABCF2
Genetics Home Reference (NIH)ABCF2
Genomic and cartography
GoldenPath hg19 (UCSC)ABCF2  -     chr7:150904923-150924460 -  7q36.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ABCF2  -     7q36.1   [Description]    (hg38-Dec_2013)
EnsemblABCF2 - 7q36.1 [CytoView hg19]  ABCF2 - 7q36.1 [CytoView hg38]
Mapping of homologs : NCBIABCF2 [Mapview hg19]  ABCF2 [Mapview hg38]
OMIM612510   
Gene and transcription
Genbank (Entrez)AF091073 AF261091 AF261092 AJ005016 AL050291
RefSeq transcript (Entrez)NM_005692 NM_007189
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929333
Consensus coding sequences : CCDS (NCBI)ABCF2
Cluster EST : UnigeneHs.654958 [ NCBI ]
CGAP (NCI)Hs.654958
Alternative Splicing GalleryENSG00000033050
Gene ExpressionABCF2 [ NCBI-GEO ]   ABCF2 [ EBI - ARRAY_EXPRESS ]   ABCF2 [ SEEK ]   ABCF2 [ MEM ]
Gene Expression Viewer (FireBrowse)ABCF2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10061
GTEX Portal (Tissue expression)ABCF2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UG63   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UG63  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UG63
Splice isoforms : SwissVarQ9UG63
PhosPhoSitePlusQ9UG63
Domaine pattern : Prosite (Expaxy)ABC_TRANSPORTER_1 (PS00211)    ABC_TRANSPORTER_2 (PS50893)   
Domains : Interpro (EBI)AAA+_ATPase    ABC_tran_Xtn    ABC_transporter-like    ABC_transporter_CS    P-loop_NTPase   
Domain families : Pfam (Sanger)ABC_tran (PF00005)    ABC_tran_Xtn (PF12848)   
Domain families : Pfam (NCBI)pfam00005    pfam12848   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)ABCF2
DMDM Disease mutations10061
Blocks (Seattle)ABCF2
SuperfamilyQ9UG63
Human Protein AtlasENSG00000033050
Peptide AtlasQ9UG63
HPRD12403
IPIIPI00005045   IPI00383658   IPI00068506   IPI00925351   IPI01015269   
Protein Interaction databases
DIP (DOE-UCLA)Q9UG63
IntAct (EBI)Q9UG63
FunCoupENSG00000033050
BioGRIDABCF2
STRING (EMBL)ABCF2
ZODIACABCF2
Ontologies - Pathways
QuickGOQ9UG63
Ontology : AmiGOtransporter activity  ATP binding  mitochondrial envelope  transport  metabolic process  membrane  ATPase activity  ATP-binding cassette (ABC) transporter complex  
Ontology : EGO-EBItransporter activity  ATP binding  mitochondrial envelope  transport  metabolic process  membrane  ATPase activity  ATP-binding cassette (ABC) transporter complex  
NDEx NetworkABCF2
Atlas of Cancer Signalling NetworkABCF2
Wikipedia pathwaysABCF2
Orthology - Evolution
OrthoDB10061
GeneTree (enSembl)ENSG00000033050
Phylogenetic Trees/Animal Genes : TreeFamABCF2
HOVERGENQ9UG63
HOGENOMQ9UG63
Homologs : HomoloGeneABCF2
Homology/Alignments : Family Browser (UCSC)ABCF2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABCF2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABCF2
dbVarABCF2
ClinVarABCF2
1000_GenomesABCF2 
Exome Variant ServerABCF2
ExAC (Exome Aggregation Consortium)ABCF2 (select the gene name)
Genetic variants : HAPMAP10061
Genomic Variants (DGV)ABCF2 [DGVbeta]
DECIPHER (Syndromes)7:150904923-150924460  ENSG00000033050
CONAN: Copy Number AnalysisABCF2 
Mutations
ICGC Data PortalABCF2 
TCGA Data PortalABCF2 
Broad Tumor PortalABCF2
OASIS PortalABCF2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICABCF2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDABCF2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ABCF2
DgiDB (Drug Gene Interaction Database)ABCF2
DoCM (Curated mutations)ABCF2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABCF2 (select a term)
intoGenABCF2
Cancer3DABCF2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612510   
Orphanet
MedgenABCF2
Genetic Testing Registry ABCF2
NextProtQ9UG63 [Medical]
TSGene10061
GENETestsABCF2
Huge Navigator ABCF2 [HugePedia]
snp3D : Map Gene to Disease10061
BioCentury BCIQABCF2
ClinGenABCF2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10061
Chemical/Pharm GKB GenePA24406
Clinical trialABCF2
Miscellaneous
canSAR (ICR)ABCF2 (select the gene name)
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABCF2
EVEXABCF2
GoPubMedABCF2
iHOPABCF2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:54:28 CET 2017

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