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ABCF3 (ATP binding cassette subfamily F member 3)

Identity

Alias_namesATP-binding cassette
Alias_symbol (synonym)EST201864
Other alias
HGNC (Hugo) ABCF3
LocusID (NCBI) 55324
Atlas_Id 54010
Location 3q27.1  [Link to chromosome band 3q27]
Location_base_pair Starts at 184186075 and ends at 184194007 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ICAM1 (19p13.2) / ABCF3 (3q27.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ABCF3   72
Cards
Entrez_Gene (NCBI)ABCF3  55324  ATP binding cassette subfamily F member 3
AliasesEST201864
GeneCards (Weizmann)ABCF3
Ensembl hg19 (Hinxton)ENSG00000161204 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161204 [Gene_View]  chr3:184186075-184194007 [Contig_View]  ABCF3 [Vega]
ICGC DataPortalENSG00000161204
TCGA cBioPortalABCF3
AceView (NCBI)ABCF3
Genatlas (Paris)ABCF3
WikiGenes55324
SOURCE (Princeton)ABCF3
Genetics Home Reference (NIH)ABCF3
Genomic and cartography
GoldenPath hg38 (UCSC)ABCF3  -     chr3:184186075-184194007 +  3q27.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABCF3  -     3q27.1   [Description]    (hg19-Feb_2009)
EnsemblABCF3 - 3q27.1 [CytoView hg19]  ABCF3 - 3q27.1 [CytoView hg38]
Mapping of homologs : NCBIABCF3 [Mapview hg19]  ABCF3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK002060 AK024758 AK027288 AK092415 AK097073
RefSeq transcript (Entrez)NM_018358
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ABCF3
Cluster EST : UnigeneHs.361323 [ NCBI ]
CGAP (NCI)Hs.361323
Alternative Splicing GalleryENSG00000161204
Gene ExpressionABCF3 [ NCBI-GEO ]   ABCF3 [ EBI - ARRAY_EXPRESS ]   ABCF3 [ SEEK ]   ABCF3 [ MEM ]
Gene Expression Viewer (FireBrowse)ABCF3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55324
GTEX Portal (Tissue expression)ABCF3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUQ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NUQ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUQ8
Splice isoforms : SwissVarQ9NUQ8
PhosPhoSitePlusQ9NUQ8
Domaine pattern : Prosite (Expaxy)ABC_TRANSPORTER_1 (PS00211)    ABC_TRANSPORTER_2 (PS50893)   
Domains : Interpro (EBI)AAA+_ATPase    ABC_tran_Xtn    ABC_transporter-like    ABC_transporter_CS    P-loop_NTPase   
Domain families : Pfam (Sanger)ABC_tran (PF00005)    ABC_tran_Xtn (PF12848)   
Domain families : Pfam (NCBI)pfam00005    pfam12848   
Domain families : Smart (EMBL)AAA (SM00382)  
Conserved Domain (NCBI)ABCF3
DMDM Disease mutations55324
Blocks (Seattle)ABCF3
SuperfamilyQ9NUQ8
Human Protein AtlasENSG00000161204
Peptide AtlasQ9NUQ8
HPRD12404
IPIIPI00465160   IPI00784776   IPI00925118   
Protein Interaction databases
DIP (DOE-UCLA)Q9NUQ8
IntAct (EBI)Q9NUQ8
FunCoupENSG00000161204
BioGRIDABCF3
STRING (EMBL)ABCF3
ZODIACABCF3
Ontologies - Pathways
QuickGOQ9NUQ8
Ontology : AmiGOprotein binding  ATP binding  membrane  ATPase activity  cadherin binding  defense response to virus  
Ontology : EGO-EBIprotein binding  ATP binding  membrane  ATPase activity  cadherin binding  defense response to virus  
NDEx NetworkABCF3
Atlas of Cancer Signalling NetworkABCF3
Wikipedia pathwaysABCF3
Orthology - Evolution
OrthoDB55324
GeneTree (enSembl)ENSG00000161204
Phylogenetic Trees/Animal Genes : TreeFamABCF3
HOVERGENQ9NUQ8
HOGENOMQ9NUQ8
Homologs : HomoloGeneABCF3
Homology/Alignments : Family Browser (UCSC)ABCF3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABCF3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABCF3
dbVarABCF3
ClinVarABCF3
1000_GenomesABCF3 
Exome Variant ServerABCF3
ExAC (Exome Aggregation Consortium)ABCF3 (select the gene name)
Genetic variants : HAPMAP55324
Genomic Variants (DGV)ABCF3 [DGVbeta]
DECIPHERABCF3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisABCF3 
Mutations
ICGC Data PortalABCF3 
TCGA Data PortalABCF3 
Broad Tumor PortalABCF3
OASIS PortalABCF3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICABCF3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDABCF3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ABCF3
DgiDB (Drug Gene Interaction Database)ABCF3
DoCM (Curated mutations)ABCF3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABCF3 (select a term)
intoGenABCF3
Cancer3DABCF3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenABCF3
Genetic Testing Registry ABCF3
NextProtQ9NUQ8 [Medical]
TSGene55324
GENETestsABCF3
Target ValidationABCF3
Huge Navigator ABCF3 [HugePedia]
snp3D : Map Gene to Disease55324
BioCentury BCIQABCF3
ClinGenABCF3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55324
Chemical/Pharm GKB GenePA24407
Clinical trialABCF3
Miscellaneous
canSAR (ICR)ABCF3 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABCF3
EVEXABCF3
GoPubMedABCF3
iHOPABCF3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:22:21 CEST 2017

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