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ABCG1 (ATP binding cassette subfamily G member 1)

Identity

Alias (NCBI)ABC8
WHITE1
HGNC (Hugo) ABCG1
HGNC Alias symbABC8
HGNC Alias nameATP-binding cassette transporter 8
HGNC Previous nameATP-binding cassette, sub-family G (WHITE), member 1
LocusID (NCBI) 9619
Atlas_Id 54096
Location 21q22.3  [Link to chromosome band 21q22]
Location_base_pair Starts at 42216077 and ends at 42297244 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACSBG1 (15q25.1) / ABCG1 (21q22.3)BRWD1 (21q22.2) / ABCG1 (21q22.3)PDE9A (21q22.3) / ABCG1 (21q22.3)
PLOD2 (3q24) / ABCG1 (21q22.3)SLC37A1 (21q22.3) / ABCG1 (21q22.3)BRWD1 21q22.2 / ABCG1 21q22.3
PDE9A 21q22.3 / ABCG1 21q22.3PLOD2 3q24 / ABCG1 21q22.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)ABCG1   73
Cards
Entrez_Gene (NCBI)ABCG1    ATP binding cassette subfamily G member 1
AliasesABC8; WHITE1
GeneCards (Weizmann)ABCG1
Ensembl hg19 (Hinxton)ENSG00000160179 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000160179 [Gene_View]  ENSG00000160179 [Sequence]  chr21:42216077-42297244 [Contig_View]  ABCG1 [Vega]
ICGC DataPortalENSG00000160179
TCGA cBioPortalABCG1
AceView (NCBI)ABCG1
Genatlas (Paris)ABCG1
SOURCE (Princeton)ABCG1
Genetics Home Reference (NIH)ABCG1
Genomic and cartography
GoldenPath hg38 (UCSC)ABCG1  -     chr21:42216077-42297244 +  21q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABCG1  -     21q22.3   [Description]    (hg19-Feb_2009)
GoldenPathABCG1 - 21q22.3 [CytoView hg19]  ABCG1 - 21q22.3 [CytoView hg38]
ImmunoBaseENSG00000160179
Genome Data Viewer NCBIABCG1 [Mapview hg19]  
OMIM603076   
Gene and transcription
Genbank (Entrez)AF038175 AF086547 AF323660 AF323661 AF323662
RefSeq transcript (Entrez)NM_004915 NM_016818 NM_207174 NM_207627 NM_207628 NM_207629 NM_207630
Consensus coding sequences : CCDS (NCBI)ABCG1
Gene ExpressionABCG1 [ NCBI-GEO ]   ABCG1 [ EBI - ARRAY_EXPRESS ]   ABCG1 [ SEEK ]   ABCG1 [ MEM ]
Gene Expression Viewer (FireBrowse)ABCG1 [ Firebrowse - Broad ]
GenevisibleExpression of ABCG1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9619
GTEX Portal (Tissue expression)ABCG1
Human Protein AtlasENSG00000160179-ABCG1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ABCG1
Human Protein Atlas [tissue]ENSG00000160179-ABCG1 [tissue]
HPRD04355
Protein Interaction databases
BioGRIDABCG1
STRING (EMBL)ABCG1
ZODIACABCG1
Ontologies - Pathways
Litterature
PubMed162 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXABCG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 14:58:04 CEST 2021

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