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ABHD13 (abhydrolase domain containing 13)

Identity

Alias_namesC13orf6
chromosome 13 open reading frame 6
Alias_symbol (synonym)bA153I24.2
FLJ14906
BEM46L1
Other alias
HGNC (Hugo) ABHD13
LocusID (NCBI) 84945
Atlas_Id 60051
Location 13q33.3  [Link to chromosome band 13q33]
Location_base_pair Starts at 108218415 and ends at 108234255 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ABHD13   20293
Cards
Entrez_Gene (NCBI)ABHD13  84945  abhydrolase domain containing 13
AliasesBEM46L1; C13orf6; bA153I24.2
GeneCards (Weizmann)ABHD13
Ensembl hg19 (Hinxton)ENSG00000139826 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139826 [Gene_View]  chr13:108218415-108234255 [Contig_View]  ABHD13 [Vega]
ICGC DataPortalENSG00000139826
TCGA cBioPortalABHD13
AceView (NCBI)ABHD13
Genatlas (Paris)ABHD13
WikiGenes84945
SOURCE (Princeton)ABHD13
Genetics Home Reference (NIH)ABHD13
Genomic and cartography
GoldenPath hg38 (UCSC)ABHD13  -     chr13:108218415-108234255 +  13q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABHD13  -     13q33.3   [Description]    (hg19-Feb_2009)
EnsemblABHD13 - 13q33.3 [CytoView hg19]  ABHD13 - 13q33.3 [CytoView hg38]
Mapping of homologs : NCBIABHD13 [Mapview hg19]  ABHD13 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027812 AK075195 AK124864 BC018608 BC022566
RefSeq transcript (Entrez)NM_032859
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ABHD13
Cluster EST : UnigeneHs.183528 [ NCBI ]
CGAP (NCI)Hs.183528
Alternative Splicing GalleryENSG00000139826
Gene ExpressionABHD13 [ NCBI-GEO ]   ABHD13 [ EBI - ARRAY_EXPRESS ]   ABHD13 [ SEEK ]   ABHD13 [ MEM ]
Gene Expression Viewer (FireBrowse)ABHD13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84945
GTEX Portal (Tissue expression)ABHD13
Human Protein AtlasENSG00000139826-ABHD13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L211   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L211  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L211
Splice isoforms : SwissVarQ7L211
Catalytic activity : Enzyme3.-.-.- [ Enzyme-Expasy ]   3.-.-.-3.-.-.- [ IntEnz-EBI ]   3.-.-.- [ BRENDA ]   3.-.-.- [ KEGG ]   
PhosPhoSitePlusQ7L211
Domains : Interpro (EBI)AB_hydrolase    Hydrolase_4   
Domain families : Pfam (Sanger)Hydrolase_4 (PF12146)   
Domain families : Pfam (NCBI)pfam12146   
Conserved Domain (NCBI)ABHD13
DMDM Disease mutations84945
Blocks (Seattle)ABHD13
SuperfamilyQ7L211
Human Protein Atlas [tissue]ENSG00000139826-ABHD13 [tissue]
Peptide AtlasQ7L211
HPRD12618
IPIIPI00064462   
Protein Interaction databases
DIP (DOE-UCLA)Q7L211
IntAct (EBI)Q7L211
FunCoupENSG00000139826
BioGRIDABHD13
STRING (EMBL)ABHD13
ZODIACABHD13
Ontologies - Pathways
QuickGOQ7L211
Ontology : AmiGOmembrane  integral component of membrane  hydrolase activity  
Ontology : EGO-EBImembrane  integral component of membrane  hydrolase activity  
NDEx NetworkABHD13
Atlas of Cancer Signalling NetworkABHD13
Wikipedia pathwaysABHD13
Orthology - Evolution
OrthoDB84945
GeneTree (enSembl)ENSG00000139826
Phylogenetic Trees/Animal Genes : TreeFamABHD13
HOVERGENQ7L211
HOGENOMQ7L211
Homologs : HomoloGeneABHD13
Homology/Alignments : Family Browser (UCSC)ABHD13
Gene fusions - Rearrangements
Tumor Fusion PortalABHD13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABHD13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABHD13
dbVarABHD13
ClinVarABHD13
1000_GenomesABHD13 
Exome Variant ServerABHD13
ExAC (Exome Aggregation Consortium)ENSG00000139826
GNOMAD BrowserENSG00000139826
Genetic variants : HAPMAP84945
Genomic Variants (DGV)ABHD13 [DGVbeta]
DECIPHERABHD13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisABHD13 
Mutations
ICGC Data PortalABHD13 
TCGA Data PortalABHD13 
Broad Tumor PortalABHD13
OASIS PortalABHD13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICABHD13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDABHD13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ABHD13
DgiDB (Drug Gene Interaction Database)ABHD13
DoCM (Curated mutations)ABHD13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABHD13 (select a term)
intoGenABHD13
Cancer3DABHD13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETABHD13
MedgenABHD13
Genetic Testing Registry ABHD13
NextProtQ7L211 [Medical]
TSGene84945
GENETestsABHD13
Target ValidationABHD13
Huge Navigator ABHD13 [HugePedia]
snp3D : Map Gene to Disease84945
BioCentury BCIQABHD13
ClinGenABHD13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84945
Chemical/Pharm GKB GenePA134862303
Clinical trialABHD13
Miscellaneous
canSAR (ICR)ABHD13 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABHD13
EVEXABHD13
GoPubMedABHD13
iHOPABHD13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 19:17:37 CET 2017

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