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ABHD16A (abhydrolase domain containing 16A)

Identity

Alias_namesBAT5
HLA-B associated transcript 5
Alias_symbol (synonym)NG26
D6S82E
Other aliasPP199
HGNC (Hugo) ABHD16A
LocusID (NCBI) 7920
Atlas_Id 54098
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31686949 and ends at 31703073 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ABHD16A (6p21.33) / ABCD4 (14q24.3)ABHD16A (6p21.33) / FKBPL (6p21.33)LY6G5C (6p21.33) / ABHD16A (6p21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ABHD16A   13921
Cards
Entrez_Gene (NCBI)ABHD16A  7920  abhydrolase domain containing 16A
AliasesBAT5; D6S82E; NG26; PP199
GeneCards (Weizmann)ABHD16A
Ensembl hg19 (Hinxton)ENSG00000204427 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204427 [Gene_View]  chr6:31686949-31703073 [Contig_View]  ABHD16A [Vega]
ICGC DataPortalENSG00000204427
TCGA cBioPortalABHD16A
AceView (NCBI)ABHD16A
Genatlas (Paris)ABHD16A
WikiGenes7920
SOURCE (Princeton)ABHD16A
Genetics Home Reference (NIH)ABHD16A
Genomic and cartography
GoldenPath hg38 (UCSC)ABHD16A  -     chr6:31686949-31703073 -  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABHD16A  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblABHD16A - 6p21.33 [CytoView hg19]  ABHD16A - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBIABHD16A [Mapview hg19]  ABHD16A [Mapview hg38]
OMIM142620   
Gene and transcription
Genbank (Entrez)AF193047 AI076373 AK001207 AK023194 AK025398
RefSeq transcript (Entrez)NM_001177515 NM_021160
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)ABHD16A
Cluster EST : UnigeneHs.388188 [ NCBI ]
CGAP (NCI)Hs.388188
Alternative Splicing GalleryENSG00000204427
Gene ExpressionABHD16A [ NCBI-GEO ]   ABHD16A [ EBI - ARRAY_EXPRESS ]   ABHD16A [ SEEK ]   ABHD16A [ MEM ]
Gene Expression Viewer (FireBrowse)ABHD16A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7920
GTEX Portal (Tissue expression)ABHD16A
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95870   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95870  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95870
Splice isoforms : SwissVarO95870
Catalytic activity : Enzyme3.-.-.- [ Enzyme-Expasy ]   3.-.-.-3.-.-.- [ IntEnz-EBI ]   3.-.-.- [ BRENDA ]   3.-.-.- [ KEGG ]   
PhosPhoSitePlusO95870
Domains : Interpro (EBI)AB_hydrolase    AB_hydrolase_1    ABHD16A   
Domain families : Pfam (Sanger)Abhydrolase_1 (PF00561)   
Domain families : Pfam (NCBI)pfam00561   
Conserved Domain (NCBI)ABHD16A
DMDM Disease mutations7920
Blocks (Seattle)ABHD16A
SuperfamilyO95870
Human Protein AtlasENSG00000204427
Peptide AtlasO95870
HPRD15929
IPIIPI00033075   IPI00946658   IPI00922552   IPI00791049   IPI00790465   IPI01014000   IPI00946420   IPI00947044   IPI00945923   
Protein Interaction databases
DIP (DOE-UCLA)O95870
IntAct (EBI)O95870
FunCoupENSG00000204427
BioGRIDABHD16A
STRING (EMBL)ABHD16A
ZODIACABHD16A
Ontologies - Pathways
QuickGOO95870
Ontology : AmiGOlysophospholipase activity  protein binding  integral component of membrane  acylglycerol lipase activity  monoacylglycerol catabolic process  prostaglandin catabolic process  
Ontology : EGO-EBIlysophospholipase activity  protein binding  integral component of membrane  acylglycerol lipase activity  monoacylglycerol catabolic process  prostaglandin catabolic process  
NDEx NetworkABHD16A
Atlas of Cancer Signalling NetworkABHD16A
Wikipedia pathwaysABHD16A
Orthology - Evolution
OrthoDB7920
GeneTree (enSembl)ENSG00000204427
Phylogenetic Trees/Animal Genes : TreeFamABHD16A
HOVERGENO95870
HOGENOMO95870
Homologs : HomoloGeneABHD16A
Homology/Alignments : Family Browser (UCSC)ABHD16A
Gene fusions - Rearrangements
Fusion : MitelmanLY6G5C/ABHD16A [6p21.33/6p21.33]  [t(6;6)(p21;p21)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABHD16A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABHD16A
dbVarABHD16A
ClinVarABHD16A
1000_GenomesABHD16A 
Exome Variant ServerABHD16A
ExAC (Exome Aggregation Consortium)ABHD16A (select the gene name)
Genetic variants : HAPMAP7920
Genomic Variants (DGV)ABHD16A [DGVbeta]
DECIPHERABHD16A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisABHD16A 
Mutations
ICGC Data PortalABHD16A 
TCGA Data PortalABHD16A 
Broad Tumor PortalABHD16A
OASIS PortalABHD16A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICABHD16A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDABHD16A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ABHD16A
DgiDB (Drug Gene Interaction Database)ABHD16A
DoCM (Curated mutations)ABHD16A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABHD16A (select a term)
intoGenABHD16A
Cancer3DABHD16A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM142620   
Orphanet
MedgenABHD16A
Genetic Testing Registry ABHD16A
NextProtO95870 [Medical]
TSGene7920
GENETestsABHD16A
Huge Navigator ABHD16A [HugePedia]
snp3D : Map Gene to Disease7920
BioCentury BCIQABHD16A
ClinGenABHD16A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7920
Chemical/Pharm GKB GenePA25266
Clinical trialABHD16A
Miscellaneous
canSAR (ICR)ABHD16A (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABHD16A
EVEXABHD16A
GoPubMedABHD16A
iHOPABHD16A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:04:37 CEST 2017

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