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ABHD16B (abhydrolase domain containing 16B)

Identity

Alias_namesC20orf135
chromosome 20 open reading frame 135
Alias_symbol (synonym)dJ591C20.1
Other alias
HGNC (Hugo) ABHD16B
LocusID (NCBI) 140701
Atlas_Id 60055
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 63861213 and ends at 63862988 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ABHD16B   16128
Cards
Entrez_Gene (NCBI)ABHD16B  140701  abhydrolase domain containing 16B
AliasesC20orf135; dJ591C20.1
GeneCards (Weizmann)ABHD16B
Ensembl hg19 (Hinxton)ENSG00000183260 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183260 [Gene_View]  chr20:63861213-63862988 [Contig_View]  ABHD16B [Vega]
ICGC DataPortalENSG00000183260
TCGA cBioPortalABHD16B
AceView (NCBI)ABHD16B
Genatlas (Paris)ABHD16B
WikiGenes140701
SOURCE (Princeton)ABHD16B
Genetics Home Reference (NIH)ABHD16B
Genomic and cartography
GoldenPath hg38 (UCSC)ABHD16B  -     chr20:63861213-63862988 +  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABHD16B  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblABHD16B - 20q13.33 [CytoView hg19]  ABHD16B - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBIABHD16B [Mapview hg19]  ABHD16B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW772131 BC031949 BC166655 BM700775
RefSeq transcript (Entrez)NM_080622
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ABHD16B
Cluster EST : UnigeneHs.675171 [ NCBI ]
CGAP (NCI)Hs.675171
Alternative Splicing GalleryENSG00000183260
Gene ExpressionABHD16B [ NCBI-GEO ]   ABHD16B [ EBI - ARRAY_EXPRESS ]   ABHD16B [ SEEK ]   ABHD16B [ MEM ]
Gene Expression Viewer (FireBrowse)ABHD16B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140701
GTEX Portal (Tissue expression)ABHD16B
Human Protein AtlasENSG00000183260-ABHD16B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H3Z7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H3Z7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H3Z7
Splice isoforms : SwissVarQ9H3Z7
Catalytic activity : Enzyme3.-.-.- [ Enzyme-Expasy ]   3.-.-.-3.-.-.- [ IntEnz-EBI ]   3.-.-.- [ BRENDA ]   3.-.-.- [ KEGG ]   
PhosPhoSitePlusQ9H3Z7
Domains : Interpro (EBI)AB_hydrolase    AB_hydrolase_1   
Domain families : Pfam (Sanger)Abhydrolase_1 (PF00561)   
Domain families : Pfam (NCBI)pfam00561   
Conserved Domain (NCBI)ABHD16B
DMDM Disease mutations140701
Blocks (Seattle)ABHD16B
SuperfamilyQ9H3Z7
Human Protein Atlas [tissue]ENSG00000183260-ABHD16B [tissue]
Peptide AtlasQ9H3Z7
HPRD12746
IPIIPI00168410   IPI00744173   
Protein Interaction databases
DIP (DOE-UCLA)Q9H3Z7
IntAct (EBI)Q9H3Z7
FunCoupENSG00000183260
BioGRIDABHD16B
STRING (EMBL)ABHD16B
ZODIACABHD16B
Ontologies - Pathways
QuickGOQ9H3Z7
Ontology : AmiGOhydrolase activity  
Ontology : EGO-EBIhydrolase activity  
NDEx NetworkABHD16B
Atlas of Cancer Signalling NetworkABHD16B
Wikipedia pathwaysABHD16B
Orthology - Evolution
OrthoDB140701
GeneTree (enSembl)ENSG00000183260
Phylogenetic Trees/Animal Genes : TreeFamABHD16B
HOVERGENQ9H3Z7
HOGENOMQ9H3Z7
Homologs : HomoloGeneABHD16B
Homology/Alignments : Family Browser (UCSC)ABHD16B
Gene fusions - Rearrangements
Tumor Fusion PortalABHD16B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABHD16B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABHD16B
dbVarABHD16B
ClinVarABHD16B
1000_GenomesABHD16B 
Exome Variant ServerABHD16B
ExAC (Exome Aggregation Consortium)ENSG00000183260
GNOMAD BrowserENSG00000183260
Genetic variants : HAPMAP140701
Genomic Variants (DGV)ABHD16B [DGVbeta]
DECIPHERABHD16B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisABHD16B 
Mutations
ICGC Data PortalABHD16B 
TCGA Data PortalABHD16B 
Broad Tumor PortalABHD16B
OASIS PortalABHD16B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICABHD16B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDABHD16B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ABHD16B
DgiDB (Drug Gene Interaction Database)ABHD16B
DoCM (Curated mutations)ABHD16B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABHD16B (select a term)
intoGenABHD16B
Cancer3DABHD16B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETABHD16B
MedgenABHD16B
Genetic Testing Registry ABHD16B
NextProtQ9H3Z7 [Medical]
TSGene140701
GENETestsABHD16B
Target ValidationABHD16B
Huge Navigator ABHD16B [HugePedia]
snp3D : Map Gene to Disease140701
BioCentury BCIQABHD16B
ClinGenABHD16B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140701
Chemical/Pharm GKB GenePA25677
Clinical trialABHD16B
Miscellaneous
canSAR (ICR)ABHD16B (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABHD16B
EVEXABHD16B
GoPubMedABHD16B
iHOPABHD16B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:41:10 CET 2017

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