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ABHD17A (abhydrolase domain containing 17A)

Identity

Alias_namesC19orf27
FAM108A1
chromosome 19 open reading frame 27
family with sequence similarity 108, member A1
Alias_symbol (synonym)MGC5244
Other alias
HGNC (Hugo) ABHD17A
LocusID (NCBI) 81926
Atlas_Id 60056
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 1876976 and ends at 1885519 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ABHD17A (19p13.3) / ABHD17A (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ABHD17A   28756
Cards
Entrez_Gene (NCBI)ABHD17A  81926  abhydrolase domain containing 17A
AliasesC19orf27; FAM108A1
GeneCards (Weizmann)ABHD17A
Ensembl hg19 (Hinxton)ENSG00000129968 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000129968 [Gene_View]  chr19:1876976-1885519 [Contig_View]  ABHD17A [Vega]
ICGC DataPortalENSG00000129968
TCGA cBioPortalABHD17A
AceView (NCBI)ABHD17A
Genatlas (Paris)ABHD17A
WikiGenes81926
SOURCE (Princeton)ABHD17A
Genetics Home Reference (NIH)ABHD17A
Genomic and cartography
GoldenPath hg38 (UCSC)ABHD17A  -     chr19:1876976-1885519 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABHD17A  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblABHD17A - 19p13.3 [CytoView hg19]  ABHD17A - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIABHD17A [Mapview hg19]  ABHD17A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK024419 AK074043 AK074548 AK090438 AK289533
RefSeq transcript (Entrez)NM_001130111 NM_031213
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ABHD17A
Cluster EST : UnigeneHs.653679 [ NCBI ]
CGAP (NCI)Hs.653679
Alternative Splicing GalleryENSG00000129968
Gene ExpressionABHD17A [ NCBI-GEO ]   ABHD17A [ EBI - ARRAY_EXPRESS ]   ABHD17A [ SEEK ]   ABHD17A [ MEM ]
Gene Expression Viewer (FireBrowse)ABHD17A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81926
GTEX Portal (Tissue expression)ABHD17A
Human Protein AtlasENSG00000129968-ABHD17A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96GS6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96GS6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96GS6
Splice isoforms : SwissVarQ96GS6
Catalytic activity : Enzyme3.-.-.- [ Enzyme-Expasy ]   3.-.-.-3.-.-.- [ IntEnz-EBI ]   3.-.-.- [ BRENDA ]   3.-.-.- [ KEGG ]   
PhosPhoSitePlusQ96GS6
Domains : Interpro (EBI)AB_hydrolase    Hydrolase_4   
Domain families : Pfam (Sanger)Hydrolase_4 (PF12146)   
Domain families : Pfam (NCBI)pfam12146   
Conserved Domain (NCBI)ABHD17A
DMDM Disease mutations81926
Blocks (Seattle)ABHD17A
SuperfamilyQ96GS6
Human Protein Atlas [tissue]ENSG00000129968-ABHD17A [tissue]
Peptide AtlasQ96GS6
HPRD07475
IPIIPI00643408   IPI00102923   IPI00854784   IPI00854853   
Protein Interaction databases
DIP (DOE-UCLA)Q96GS6
IntAct (EBI)Q96GS6
FunCoupENSG00000129968
BioGRIDABHD17A
STRING (EMBL)ABHD17A
ZODIACABHD17A
Ontologies - Pathways
QuickGOQ96GS6
Ontology : AmiGOprotein binding  extracellular region  biological_process  membrane  hydrolase activity  
Ontology : EGO-EBIprotein binding  extracellular region  biological_process  membrane  hydrolase activity  
NDEx NetworkABHD17A
Atlas of Cancer Signalling NetworkABHD17A
Wikipedia pathwaysABHD17A
Orthology - Evolution
OrthoDB81926
GeneTree (enSembl)ENSG00000129968
Phylogenetic Trees/Animal Genes : TreeFamABHD17A
HOVERGENQ96GS6
HOGENOMQ96GS6
Homologs : HomoloGeneABHD17A
Homology/Alignments : Family Browser (UCSC)ABHD17A
Gene fusions - Rearrangements
Fusion: Tumor Portal ABHD17A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABHD17A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABHD17A
dbVarABHD17A
ClinVarABHD17A
1000_GenomesABHD17A 
Exome Variant ServerABHD17A
ExAC (Exome Aggregation Consortium)ENSG00000129968
GNOMAD BrowserENSG00000129968
Genetic variants : HAPMAP81926
Genomic Variants (DGV)ABHD17A [DGVbeta]
DECIPHERABHD17A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisABHD17A 
Mutations
ICGC Data PortalABHD17A 
TCGA Data PortalABHD17A 
Broad Tumor PortalABHD17A
OASIS PortalABHD17A [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDABHD17A
BioMutasearch ABHD17A
DgiDB (Drug Gene Interaction Database)ABHD17A
DoCM (Curated mutations)ABHD17A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABHD17A (select a term)
intoGenABHD17A
Cancer3DABHD17A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenABHD17A
Genetic Testing Registry ABHD17A
NextProtQ96GS6 [Medical]
TSGene81926
GENETestsABHD17A
Target ValidationABHD17A
Huge Navigator ABHD17A [HugePedia]
snp3D : Map Gene to Disease81926
BioCentury BCIQABHD17A
ClinGenABHD17A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81926
Chemical/Pharm GKB GenePA134947443
Clinical trialABHD17A
Miscellaneous
canSAR (ICR)ABHD17A (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABHD17A
EVEXABHD17A
GoPubMedABHD17A
iHOPABHD17A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:36:47 CET 2017

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