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ABHD17B (abhydrolase domain containing 17B)

Identity

Alias_namesC9orf77
FAM108B1
chromosome 9 open reading frame 77
family with sequence similarity 108, member B1
Alias_symbol (synonym)CGI-67
Other alias
HGNC (Hugo) ABHD17B
LocusID (NCBI) 51104
Atlas_Id 60057
Location 9q21.13  [Link to chromosome band 9q21]
Location_base_pair Starts at 71865152 and ends at 71911245 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ABHD17B (9q21.13) / ABHD17B (9q21.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ABHD17B   24278
Cards
Entrez_Gene (NCBI)ABHD17B  51104  abhydrolase domain containing 17B
AliasesC9orf77; CGI-67; FAM108B1
GeneCards (Weizmann)ABHD17B
Ensembl hg19 (Hinxton)ENSG00000107362 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000107362 [Gene_View]  chr9:71865152-71911245 [Contig_View]  ABHD17B [Vega]
ICGC DataPortalENSG00000107362
TCGA cBioPortalABHD17B
AceView (NCBI)ABHD17B
Genatlas (Paris)ABHD17B
WikiGenes51104
SOURCE (Princeton)ABHD17B
Genetics Home Reference (NIH)ABHD17B
Genomic and cartography
GoldenPath hg38 (UCSC)ABHD17B  -     chr9:71865152-71911245 -  9q21.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABHD17B  -     9q21.13   [Description]    (hg19-Feb_2009)
EnsemblABHD17B - 9q21.13 [CytoView hg19]  ABHD17B - 9q21.13 [CytoView hg38]
Mapping of homologs : NCBIABHD17B [Mapview hg19]  ABHD17B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF151825 AI564777 AK293060 BC038390 BC044576
RefSeq transcript (Entrez)NM_001025780 NM_016014
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ABHD17B
Cluster EST : UnigeneHs.380389 [ NCBI ]
CGAP (NCI)Hs.380389
Alternative Splicing GalleryENSG00000107362
Gene ExpressionABHD17B [ NCBI-GEO ]   ABHD17B [ EBI - ARRAY_EXPRESS ]   ABHD17B [ SEEK ]   ABHD17B [ MEM ]
Gene Expression Viewer (FireBrowse)ABHD17B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51104
GTEX Portal (Tissue expression)ABHD17B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VST6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VST6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VST6
Splice isoforms : SwissVarQ5VST6
Catalytic activity : Enzyme3.-.-.- [ Enzyme-Expasy ]   3.-.-.-3.-.-.- [ IntEnz-EBI ]   3.-.-.- [ BRENDA ]   3.-.-.- [ KEGG ]   
PhosPhoSitePlusQ5VST6
Domains : Interpro (EBI)AB_hydrolase    Hydrolase_4   
Domain families : Pfam (Sanger)Hydrolase_4 (PF12146)   
Domain families : Pfam (NCBI)pfam12146   
Conserved Domain (NCBI)ABHD17B
DMDM Disease mutations51104
Blocks (Seattle)ABHD17B
SuperfamilyQ5VST6
Human Protein AtlasENSG00000107362
Peptide AtlasQ5VST6
HPRD12978
IPIIPI00412592   IPI00643071   
Protein Interaction databases
DIP (DOE-UCLA)Q5VST6
IntAct (EBI)Q5VST6
FunCoupENSG00000107362
BioGRIDABHD17B
STRING (EMBL)ABHD17B
ZODIACABHD17B
Ontologies - Pathways
QuickGOQ5VST6
Ontology : AmiGOextracellular region  membrane  hydrolase activity  
Ontology : EGO-EBIextracellular region  membrane  hydrolase activity  
NDEx NetworkABHD17B
Atlas of Cancer Signalling NetworkABHD17B
Wikipedia pathwaysABHD17B
Orthology - Evolution
OrthoDB51104
GeneTree (enSembl)ENSG00000107362
Phylogenetic Trees/Animal Genes : TreeFamABHD17B
HOVERGENQ5VST6
HOGENOMQ5VST6
Homologs : HomoloGeneABHD17B
Homology/Alignments : Family Browser (UCSC)ABHD17B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABHD17B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABHD17B
dbVarABHD17B
ClinVarABHD17B
1000_GenomesABHD17B 
Exome Variant ServerABHD17B
ExAC (Exome Aggregation Consortium)ABHD17B (select the gene name)
Genetic variants : HAPMAP51104
Genomic Variants (DGV)ABHD17B [DGVbeta]
DECIPHERABHD17B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisABHD17B 
Mutations
ICGC Data PortalABHD17B 
TCGA Data PortalABHD17B 
Broad Tumor PortalABHD17B
OASIS PortalABHD17B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDABHD17B
BioMutasearch ABHD17B
DgiDB (Drug Gene Interaction Database)ABHD17B
DoCM (Curated mutations)ABHD17B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABHD17B (select a term)
intoGenABHD17B
Cancer3DABHD17B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenABHD17B
Genetic Testing Registry ABHD17B
NextProtQ5VST6 [Medical]
TSGene51104
GENETestsABHD17B
Target ValidationABHD17B
Huge Navigator ABHD17B [HugePedia]
snp3D : Map Gene to Disease51104
BioCentury BCIQABHD17B
ClinGenABHD17B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51104
Chemical/Pharm GKB GenePA162385624
Clinical trialABHD17B
Miscellaneous
canSAR (ICR)ABHD17B (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABHD17B
EVEXABHD17B
GoPubMedABHD17B
iHOPABHD17B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:00:41 CEST 2017

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