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ABHD17C (abhydrolase domain containing 17C)

Identity

Alias_namesFAM108C1
family with sequence similarity 108, member C1
Other alias
HGNC (Hugo) ABHD17C
LocusID (NCBI) 58489
Atlas_Id 60058
Location 15q25.1  [Link to chromosome band 15q25]
Location_base_pair Starts at 80695311 and ends at 80755621 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ABHD17C (15q25.1) / PTOV1 (19q13.33)CEMIP (15q25.1) / ABHD17C (15q25.1)LPP (3q28) / ABHD17C (15q25.1)
MIRLET7BHG (22q13.31) / ABHD17C (15q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ABHD17C   26925
Cards
Entrez_Gene (NCBI)ABHD17C  58489  abhydrolase domain containing 17C
AliasesFAM108C1
GeneCards (Weizmann)ABHD17C
Ensembl hg19 (Hinxton)ENSG00000136379 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136379 [Gene_View]  chr15:80695311-80755621 [Contig_View]  ABHD17C [Vega]
ICGC DataPortalENSG00000136379
TCGA cBioPortalABHD17C
AceView (NCBI)ABHD17C
Genatlas (Paris)ABHD17C
WikiGenes58489
SOURCE (Princeton)ABHD17C
Genetics Home Reference (NIH)ABHD17C
Genomic and cartography
GoldenPath hg38 (UCSC)ABHD17C  -     chr15:80695311-80755621 +  15q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABHD17C  -     15q25.1   [Description]    (hg19-Feb_2009)
EnsemblABHD17C - 15q25.1 [CytoView hg19]  ABHD17C - 15q25.1 [CytoView hg38]
Mapping of homologs : NCBIABHD17C [Mapview hg19]  ABHD17C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091780 AK092758 AK298606 AL390079 BC059401
RefSeq transcript (Entrez)NM_021214
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ABHD17C
Cluster EST : UnigeneHs.459072 [ NCBI ]
CGAP (NCI)Hs.459072
Alternative Splicing GalleryENSG00000136379
Gene ExpressionABHD17C [ NCBI-GEO ]   ABHD17C [ EBI - ARRAY_EXPRESS ]   ABHD17C [ SEEK ]   ABHD17C [ MEM ]
Gene Expression Viewer (FireBrowse)ABHD17C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58489
GTEX Portal (Tissue expression)ABHD17C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PCB6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PCB6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PCB6
Splice isoforms : SwissVarQ6PCB6
Catalytic activity : Enzyme3.-.-.- [ Enzyme-Expasy ]   3.-.-.-3.-.-.- [ IntEnz-EBI ]   3.-.-.- [ BRENDA ]   3.-.-.- [ KEGG ]   
PhosPhoSitePlusQ6PCB6
Domains : Interpro (EBI)AB_hydrolase    Hydrolase_4   
Domain families : Pfam (Sanger)Hydrolase_4 (PF12146)   
Domain families : Pfam (NCBI)pfam12146   
Conserved Domain (NCBI)ABHD17C
DMDM Disease mutations58489
Blocks (Seattle)ABHD17C
SuperfamilyQ6PCB6
Human Protein AtlasENSG00000136379
Peptide AtlasQ6PCB6
IPIIPI00853483   IPI00747290   
Protein Interaction databases
DIP (DOE-UCLA)Q6PCB6
IntAct (EBI)Q6PCB6
FunCoupENSG00000136379
BioGRIDABHD17C
STRING (EMBL)ABHD17C
ZODIACABHD17C
Ontologies - Pathways
QuickGOQ6PCB6
Ontology : AmiGOhydrolase activity  
Ontology : EGO-EBIhydrolase activity  
NDEx NetworkABHD17C
Atlas of Cancer Signalling NetworkABHD17C
Wikipedia pathwaysABHD17C
Orthology - Evolution
OrthoDB58489
GeneTree (enSembl)ENSG00000136379
Phylogenetic Trees/Animal Genes : TreeFamABHD17C
HOVERGENQ6PCB6
HOGENOMQ6PCB6
Homologs : HomoloGeneABHD17C
Homology/Alignments : Family Browser (UCSC)ABHD17C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABHD17C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABHD17C
dbVarABHD17C
ClinVarABHD17C
1000_GenomesABHD17C 
Exome Variant ServerABHD17C
ExAC (Exome Aggregation Consortium)ABHD17C (select the gene name)
Genetic variants : HAPMAP58489
Genomic Variants (DGV)ABHD17C [DGVbeta]
DECIPHERABHD17C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisABHD17C 
Mutations
ICGC Data PortalABHD17C 
TCGA Data PortalABHD17C 
Broad Tumor PortalABHD17C
OASIS PortalABHD17C [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDABHD17C
BioMutasearch ABHD17C
DgiDB (Drug Gene Interaction Database)ABHD17C
DoCM (Curated mutations)ABHD17C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABHD17C (select a term)
intoGenABHD17C
Cancer3DABHD17C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenABHD17C
Genetic Testing Registry ABHD17C
NextProtQ6PCB6 [Medical]
TSGene58489
GENETestsABHD17C
Huge Navigator ABHD17C [HugePedia]
snp3D : Map Gene to Disease58489
BioCentury BCIQABHD17C
ClinGenABHD17C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58489
Chemical/Pharm GKB GenePA162385639
Clinical trialABHD17C
Miscellaneous
canSAR (ICR)ABHD17C (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABHD17C
EVEXABHD17C
GoPubMedABHD17C
iHOPABHD17C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 10:59:00 CEST 2017

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