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ABHD3 (abhydrolase domain containing 3)

Identity

Alias_symbol (synonym)LABH3
Other alias
HGNC (Hugo) ABHD3
LocusID (NCBI) 171586
Atlas_Id 60060
Location 18q11.2  [Link to chromosome band 18q11]
Location_base_pair Starts at 19230858 and ends at 19284766 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ESCO1 (18q11.2) / ABHD3 (18q11.2)ROCK1 (18q11.1) / ABHD3 (18q11.2)ZFAND2A (7p22.3) / ABHD3 (18q11.2)
ROCK1 ABHD3ESCO1 ABHD3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ABHD3   18718
Cards
Entrez_Gene (NCBI)ABHD3  171586  abhydrolase domain containing 3
AliasesLABH3
GeneCards (Weizmann)ABHD3
Ensembl hg19 (Hinxton)ENSG00000158201 [Gene_View]  chr18:19230858-19284766 [Contig_View]  ABHD3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000158201 [Gene_View]  chr18:19230858-19284766 [Contig_View]  ABHD3 [Vega]
ICGC DataPortalENSG00000158201
TCGA cBioPortalABHD3
AceView (NCBI)ABHD3
Genatlas (Paris)ABHD3
WikiGenes171586
SOURCE (Princeton)ABHD3
Genetics Home Reference (NIH)ABHD3
Genomic and cartography
GoldenPath hg19 (UCSC)ABHD3  -     chr18:19230858-19284766 -  18q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ABHD3  -     18q11.2   [Description]    (hg38-Dec_2013)
EnsemblABHD3 - 18q11.2 [CytoView hg19]  ABHD3 - 18q11.2 [CytoView hg38]
Mapping of homologs : NCBIABHD3 [Mapview hg19]  ABHD3 [Mapview hg38]
OMIM612197   
Gene and transcription
Genbank (Entrez)AF007152 AK024880 AK024992 AK298728 AV654056
RefSeq transcript (Entrez)NM_001308256 NM_001308257 NM_138340
RefSeq genomic (Entrez)NC_000018 NC_018929 NT_010966 NW_004929410
Consensus coding sequences : CCDS (NCBI)ABHD3
Cluster EST : UnigeneHs.397978 [ NCBI ]
CGAP (NCI)Hs.397978
Alternative Splicing GalleryENSG00000158201
Gene ExpressionABHD3 [ NCBI-GEO ]   ABHD3 [ EBI - ARRAY_EXPRESS ]   ABHD3 [ SEEK ]   ABHD3 [ MEM ]
Gene Expression Viewer (FireBrowse)ABHD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)171586
GTEX Portal (Tissue expression)ABHD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WU67   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WU67  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WU67
Splice isoforms : SwissVarQ8WU67
PhosPhoSitePlusQ8WU67
Domaine pattern : Prosite (Expaxy)UPF0017 (PS01133)   
Domains : Interpro (EBI)AB-Hydro_YheT    AB_hydrolase    AB_hydrolase_1    UPF0017_hydro-like_CS   
Domain families : Pfam (Sanger)Abhydrolase_6 (PF12697)   
Domain families : Pfam (NCBI)pfam12697   
Conserved Domain (NCBI)ABHD3
DMDM Disease mutations171586
Blocks (Seattle)ABHD3
SuperfamilyQ8WU67
Human Protein AtlasENSG00000158201
Peptide AtlasQ8WU67
HPRD12405
IPIIPI00646051   
Protein Interaction databases
DIP (DOE-UCLA)Q8WU67
IntAct (EBI)Q8WU67
FunCoupENSG00000158201
BioGRIDABHD3
STRING (EMBL)ABHD3
ZODIACABHD3
Ontologies - Pathways
QuickGOQ8WU67
Ontology : AmiGOphospholipase A2 activity  cellular_component  phosphatidylcholine 1-acylhydrolase activity  integral component of membrane  phosphatidylcholine metabolic process  phosphatidylserine 1-acylhydrolase activity  1-acyl-2-lysophosphatidylserine acylhydrolase activity  
Ontology : EGO-EBIphospholipase A2 activity  cellular_component  phosphatidylcholine 1-acylhydrolase activity  integral component of membrane  phosphatidylcholine metabolic process  phosphatidylserine 1-acylhydrolase activity  1-acyl-2-lysophosphatidylserine acylhydrolase activity  
NDEx NetworkABHD3
Atlas of Cancer Signalling NetworkABHD3
Wikipedia pathwaysABHD3
Orthology - Evolution
OrthoDB171586
GeneTree (enSembl)ENSG00000158201
Phylogenetic Trees/Animal Genes : TreeFamABHD3
HOVERGENQ8WU67
HOGENOMQ8WU67
Homologs : HomoloGeneABHD3
Homology/Alignments : Family Browser (UCSC)ABHD3
Gene fusions - Rearrangements
Fusion: TCGAROCK1 ABHD3
Fusion: TCGAESCO1 ABHD3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABHD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABHD3
dbVarABHD3
ClinVarABHD3
1000_GenomesABHD3 
Exome Variant ServerABHD3
ExAC (Exome Aggregation Consortium)ABHD3 (select the gene name)
Genetic variants : HAPMAP171586
Genomic Variants (DGV)ABHD3 [DGVbeta]
DECIPHER (Syndromes)18:19230858-19284766  ENSG00000158201
CONAN: Copy Number AnalysisABHD3 
Mutations
ICGC Data PortalABHD3 
TCGA Data PortalABHD3 
Broad Tumor PortalABHD3
OASIS PortalABHD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICABHD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDABHD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ABHD3
DgiDB (Drug Gene Interaction Database)ABHD3
DoCM (Curated mutations)ABHD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABHD3 (select a term)
intoGenABHD3
Cancer3DABHD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612197   
Orphanet
MedgenABHD3
Genetic Testing Registry ABHD3
NextProtQ8WU67 [Medical]
TSGene171586
GENETestsABHD3
Huge Navigator ABHD3 [HugePedia]
snp3D : Map Gene to Disease171586
BioCentury BCIQABHD3
ClinGenABHD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD171586
Chemical/Pharm GKB GenePA38659
Clinical trialABHD3
Miscellaneous
canSAR (ICR)ABHD3 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABHD3
EVEXABHD3
GoPubMedABHD3
iHOPABHD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:53:24 CET 2017

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