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ABHD4 (abhydrolase domain containing 4)

Identity

Alias_symbol (synonym)FLJ12816
Other aliasABH4
HGNC (Hugo) ABHD4
LocusID (NCBI) 63874
Atlas_Id 60061
Location 14q11.2  [Link to chromosome band 14q11]
Location_base_pair Starts at 22598238 and ends at 22612359 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ABHD4 (14q11.2) / TSPYL2 (Xp11.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ABHD4   20154
Cards
Entrez_Gene (NCBI)ABHD4  63874  abhydrolase domain containing 4
AliasesABH4
GeneCards (Weizmann)ABHD4
Ensembl hg19 (Hinxton)ENSG00000100439 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100439 [Gene_View]  chr14:22598238-22612359 [Contig_View]  ABHD4 [Vega]
ICGC DataPortalENSG00000100439
TCGA cBioPortalABHD4
AceView (NCBI)ABHD4
Genatlas (Paris)ABHD4
WikiGenes63874
SOURCE (Princeton)ABHD4
Genetics Home Reference (NIH)ABHD4
Genomic and cartography
GoldenPath hg38 (UCSC)ABHD4  -     chr14:22598238-22612359 +  14q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABHD4  -     14q11.2   [Description]    (hg19-Feb_2009)
EnsemblABHD4 - 14q11.2 [CytoView hg19]  ABHD4 - 14q11.2 [CytoView hg38]
Mapping of homologs : NCBIABHD4 [Mapview hg19]  ABHD4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022878 AK024790 AK293198 AK298127 AK301315
RefSeq transcript (Entrez)NM_022060
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ABHD4
Cluster EST : UnigeneHs.445665 [ NCBI ]
CGAP (NCI)Hs.445665
Alternative Splicing GalleryENSG00000100439
Gene ExpressionABHD4 [ NCBI-GEO ]   ABHD4 [ EBI - ARRAY_EXPRESS ]   ABHD4 [ SEEK ]   ABHD4 [ MEM ]
Gene Expression Viewer (FireBrowse)ABHD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)63874
GTEX Portal (Tissue expression)ABHD4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TB40   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TB40  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TB40
Splice isoforms : SwissVarQ8TB40
Catalytic activity : Enzyme3.-.-.- [ Enzyme-Expasy ]   3.-.-.-3.-.-.- [ IntEnz-EBI ]   3.-.-.- [ BRENDA ]   3.-.-.- [ KEGG ]   
PhosPhoSitePlusQ8TB40
Domains : Interpro (EBI)AB_hydrolase    AB_hydrolase_1   
Domain families : Pfam (Sanger)Abhydrolase_1 (PF00561)   
Domain families : Pfam (NCBI)pfam00561   
Conserved Domain (NCBI)ABHD4
DMDM Disease mutations63874
Blocks (Seattle)ABHD4
SuperfamilyQ8TB40
Human Protein AtlasENSG00000100439
Peptide AtlasQ8TB40
HPRD12406
IPIIPI00290555   IPI00908587   IPI00984901   IPI01010985   IPI01012238   IPI01010807   IPI00940867   IPI01010002   IPI01009464   
Protein Interaction databases
DIP (DOE-UCLA)Q8TB40
IntAct (EBI)Q8TB40
FunCoupENSG00000100439
BioGRIDABHD4
STRING (EMBL)ABHD4
ZODIACABHD4
Ontologies - Pathways
QuickGOQ8TB40
Ontology : AmiGOendoplasmic reticulum membrane  lipid catabolic process  hydrolase activity  phosphatidylethanolamine acyl-chain remodeling  
Ontology : EGO-EBIendoplasmic reticulum membrane  lipid catabolic process  hydrolase activity  phosphatidylethanolamine acyl-chain remodeling  
NDEx NetworkABHD4
Atlas of Cancer Signalling NetworkABHD4
Wikipedia pathwaysABHD4
Orthology - Evolution
OrthoDB63874
GeneTree (enSembl)ENSG00000100439
Phylogenetic Trees/Animal Genes : TreeFamABHD4
HOVERGENQ8TB40
HOGENOMQ8TB40
Homologs : HomoloGeneABHD4
Homology/Alignments : Family Browser (UCSC)ABHD4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABHD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABHD4
dbVarABHD4
ClinVarABHD4
1000_GenomesABHD4 
Exome Variant ServerABHD4
ExAC (Exome Aggregation Consortium)ABHD4 (select the gene name)
Genetic variants : HAPMAP63874
Genomic Variants (DGV)ABHD4 [DGVbeta]
DECIPHERABHD4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisABHD4 
Mutations
ICGC Data PortalABHD4 
TCGA Data PortalABHD4 
Broad Tumor PortalABHD4
OASIS PortalABHD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICABHD4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDABHD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ABHD4
DgiDB (Drug Gene Interaction Database)ABHD4
DoCM (Curated mutations)ABHD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABHD4 (select a term)
intoGenABHD4
Cancer3DABHD4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenABHD4
Genetic Testing Registry ABHD4
NextProtQ8TB40 [Medical]
TSGene63874
GENETestsABHD4
Target ValidationABHD4
Huge Navigator ABHD4 [HugePedia]
snp3D : Map Gene to Disease63874
BioCentury BCIQABHD4
ClinGenABHD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD63874
Chemical/Pharm GKB GenePA128394705
Clinical trialABHD4
Miscellaneous
canSAR (ICR)ABHD4 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABHD4
EVEXABHD4
GoPubMedABHD4
iHOPABHD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:00:42 CEST 2017

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