Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ABHD5 (abhydrolase domain containing 5)

Identity

Alias_symbol (synonym)CGI-58
NCIE2
Other aliasCDS
CGI58
IECN2
HGNC (Hugo) ABHD5
LocusID (NCBI) 51099
Atlas_Id 53687
Location 3p21.33  [Link to chromosome band 3p21]
Location_base_pair Starts at 43690883 and ends at 43722725 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SFMBT1 (3p21.1) / ABHD5 (3p21.33)SFMBT1 3p21.1 / ABHD5 3p21.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ABHD5   21396
Cards
Entrez_Gene (NCBI)ABHD5  51099  abhydrolase domain containing 5
AliasesCDS; CGI58; IECN2; NCIE2
GeneCards (Weizmann)ABHD5
Ensembl hg19 (Hinxton)ENSG00000011198 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000011198 [Gene_View]  chr3:43690883-43722725 [Contig_View]  ABHD5 [Vega]
ICGC DataPortalENSG00000011198
TCGA cBioPortalABHD5
AceView (NCBI)ABHD5
Genatlas (Paris)ABHD5
WikiGenes51099
SOURCE (Princeton)ABHD5
Genetics Home Reference (NIH)ABHD5
Genomic and cartography
GoldenPath hg38 (UCSC)ABHD5  -     chr3:43690883-43722725 +  3p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABHD5  -     3p21.33   [Description]    (hg19-Feb_2009)
EnsemblABHD5 - 3p21.33 [CytoView hg19]  ABHD5 - 3p21.33 [CytoView hg38]
Mapping of homologs : NCBIABHD5 [Mapview hg19]  ABHD5 [Mapview hg38]
OMIM275630   604780   
Gene and transcription
Genbank (Entrez)AF007132 AF151816 AK313811 BC021958 BG721387
RefSeq transcript (Entrez)NM_016006
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ABHD5
Cluster EST : UnigeneHs.19385 [ NCBI ]
CGAP (NCI)Hs.19385
Alternative Splicing GalleryENSG00000011198
Gene ExpressionABHD5 [ NCBI-GEO ]   ABHD5 [ EBI - ARRAY_EXPRESS ]   ABHD5 [ SEEK ]   ABHD5 [ MEM ]
Gene Expression Viewer (FireBrowse)ABHD5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51099
GTEX Portal (Tissue expression)ABHD5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WTS1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WTS1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WTS1
Splice isoforms : SwissVarQ8WTS1
Catalytic activity : Enzyme2.3.1.51 [ Enzyme-Expasy ]   2.3.1.512.3.1.51 [ IntEnz-EBI ]   2.3.1.51 [ BRENDA ]   2.3.1.51 [ KEGG ]   
PhosPhoSitePlusQ8WTS1
Domains : Interpro (EBI)AB_hydrolase    AB_hydrolase_1   
Domain families : Pfam (Sanger)Abhydrolase_1 (PF00561)   
Domain families : Pfam (NCBI)pfam00561   
Conserved Domain (NCBI)ABHD5
DMDM Disease mutations51099
Blocks (Seattle)ABHD5
SuperfamilyQ8WTS1
Human Protein AtlasENSG00000011198
Peptide AtlasQ8WTS1
HPRD05308
IPIIPI00290979   IPI00878227   IPI00878061   IPI00924781   IPI00925915   
Protein Interaction databases
DIP (DOE-UCLA)Q8WTS1
IntAct (EBI)Q8WTS1
FunCoupENSG00000011198
BioGRIDABHD5
STRING (EMBL)ABHD5
ZODIACABHD5
Ontologies - Pathways
QuickGOQ8WTS1
Ontology : AmiGO1-acylglycerol-3-phosphate O-acyltransferase activity  triglyceride lipase activity  lipid particle  lipid particle  cytosol  fatty acid metabolic process  phosphatidic acid biosynthetic process  negative regulation of sequestering of triglyceride  positive regulation of triglyceride catabolic process  cell differentiation  lysophosphatidic acid acyltransferase activity  positive regulation of lipoprotein lipase activity  
Ontology : EGO-EBI1-acylglycerol-3-phosphate O-acyltransferase activity  triglyceride lipase activity  lipid particle  lipid particle  cytosol  fatty acid metabolic process  phosphatidic acid biosynthetic process  negative regulation of sequestering of triglyceride  positive regulation of triglyceride catabolic process  cell differentiation  lysophosphatidic acid acyltransferase activity  positive regulation of lipoprotein lipase activity  
NDEx NetworkABHD5
Atlas of Cancer Signalling NetworkABHD5
Wikipedia pathwaysABHD5
Orthology - Evolution
OrthoDB51099
GeneTree (enSembl)ENSG00000011198
Phylogenetic Trees/Animal Genes : TreeFamABHD5
HOVERGENQ8WTS1
HOGENOMQ8WTS1
Homologs : HomoloGeneABHD5
Homology/Alignments : Family Browser (UCSC)ABHD5
Gene fusions - Rearrangements
Fusion : MitelmanSFMBT1/ABHD5 [3p21.1/3p21.33]  [t(3;3)(p21;p21)]  
Fusion: TCGASFMBT1 3p21.1 ABHD5 3p21.33 KIRC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABHD5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABHD5
dbVarABHD5
ClinVarABHD5
1000_GenomesABHD5 
Exome Variant ServerABHD5
ExAC (Exome Aggregation Consortium)ABHD5 (select the gene name)
Genetic variants : HAPMAP51099
Genomic Variants (DGV)ABHD5 [DGVbeta]
DECIPHERABHD5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisABHD5 
Mutations
ICGC Data PortalABHD5 
TCGA Data PortalABHD5 
Broad Tumor PortalABHD5
OASIS PortalABHD5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICABHD5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDABHD5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ABHD5
DgiDB (Drug Gene Interaction Database)ABHD5
DoCM (Curated mutations)ABHD5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABHD5 (select a term)
intoGenABHD5
Cancer3DABHD5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM275630    604780   
Orphanet13924   
MedgenABHD5
Genetic Testing Registry ABHD5
NextProtQ8WTS1 [Medical]
TSGene51099
GENETestsABHD5
Target ValidationABHD5
Huge Navigator ABHD5 [HugePedia]
snp3D : Map Gene to Disease51099
BioCentury BCIQABHD5
ClinGenABHD5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51099
Chemical/Pharm GKB GenePA134891622
Clinical trialABHD5
Miscellaneous
canSAR (ICR)ABHD5 (select the gene name)
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABHD5
EVEXABHD5
GoPubMedABHD5
iHOPABHD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:45:54 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.