Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ABI3 (ABI family member 3)

Identity

Alias_namesABI family
Alias_symbol (synonym)NESH
SSH3BP3
Other alias
HGNC (Hugo) ABI3
LocusID (NCBI) 51225
Atlas_Id 547
Location 17q21.32  [Link to chromosome band 17q21]
Location_base_pair Starts at 49210227 and ends at 49223225 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ABI3   29859
Cards
Entrez_Gene (NCBI)ABI3  51225  ABI family member 3
AliasesNESH; SSH3BP3
GeneCards (Weizmann)ABI3
Ensembl hg19 (Hinxton)ENSG00000108798 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000108798 [Gene_View]  chr17:49210227-49223225 [Contig_View]  ABI3 [Vega]
ICGC DataPortalENSG00000108798
TCGA cBioPortalABI3
AceView (NCBI)ABI3
Genatlas (Paris)ABI3
WikiGenes51225
SOURCE (Princeton)ABI3
Genetics Home Reference (NIH)ABI3
Genomic and cartography
GoldenPath hg38 (UCSC)ABI3  -     chr17:49210227-49223225 +  17q21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABI3  -     17q21.32   [Description]    (hg19-Feb_2009)
EnsemblABI3 - 17q21.32 [CytoView hg19]  ABI3 - 17q21.32 [CytoView hg38]
Mapping of homologs : NCBIABI3 [Mapview hg19]  ABI3 [Mapview hg38]
OMIM606363   
Gene and transcription
Genbank (Entrez)AA808681 AB037886 AL136709 AM392779 AM392922
RefSeq transcript (Entrez)NM_001135186 NM_016428
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ABI3
Cluster EST : UnigeneHs.130719 [ NCBI ]
CGAP (NCI)Hs.130719
Alternative Splicing GalleryENSG00000108798
Gene ExpressionABI3 [ NCBI-GEO ]   ABI3 [ EBI - ARRAY_EXPRESS ]   ABI3 [ SEEK ]   ABI3 [ MEM ]
Gene Expression Viewer (FireBrowse)ABI3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51225
GTEX Portal (Tissue expression)ABI3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P2A4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P2A4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P2A4
Splice isoforms : SwissVarQ9P2A4
PhosPhoSitePlusQ9P2A4
Domaine pattern : Prosite (Expaxy)SH3 (PS50002)   
Domains : Interpro (EBI)ABI    ABI3    Abl-interactor_HHR_dom    SH3_domain   
Domain families : Pfam (Sanger)Abi_HHR (PF07815)    SH3_9 (PF14604)   
Domain families : Pfam (NCBI)pfam07815    pfam14604   
Domain families : Smart (EMBL)SH3 (SM00326)  
Conserved Domain (NCBI)ABI3
DMDM Disease mutations51225
Blocks (Seattle)ABI3
SuperfamilyQ9P2A4
Human Protein AtlasENSG00000108798
Peptide AtlasQ9P2A4
HPRD05900
IPIIPI00009273   IPI00914068   
Protein Interaction databases
DIP (DOE-UCLA)Q9P2A4
IntAct (EBI)Q9P2A4
FunCoupENSG00000108798
BioGRIDABI3
STRING (EMBL)ABI3
ZODIACABI3
Ontologies - Pathways
QuickGOQ9P2A4
Ontology : AmiGOprotein binding  intracellular  cytoplasm  cytoplasm  movement of cell or subcellular component  membrane  peptidyl-tyrosine phosphorylation  lamellipodium  regulation of cell migration  identical protein binding  
Ontology : EGO-EBIprotein binding  intracellular  cytoplasm  cytoplasm  movement of cell or subcellular component  membrane  peptidyl-tyrosine phosphorylation  lamellipodium  regulation of cell migration  identical protein binding  
NDEx NetworkABI3
Atlas of Cancer Signalling NetworkABI3
Wikipedia pathwaysABI3
Orthology - Evolution
OrthoDB51225
GeneTree (enSembl)ENSG00000108798
Phylogenetic Trees/Animal Genes : TreeFamABI3
HOVERGENQ9P2A4
HOGENOMQ9P2A4
Homologs : HomoloGeneABI3
Homology/Alignments : Family Browser (UCSC)ABI3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABI3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABI3
dbVarABI3
ClinVarABI3
1000_GenomesABI3 
Exome Variant ServerABI3
ExAC (Exome Aggregation Consortium)ABI3 (select the gene name)
Genetic variants : HAPMAP51225
Genomic Variants (DGV)ABI3 [DGVbeta]
DECIPHERABI3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisABI3 
Mutations
ICGC Data PortalABI3 
TCGA Data PortalABI3 
Broad Tumor PortalABI3
OASIS PortalABI3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICABI3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDABI3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ABI3
DgiDB (Drug Gene Interaction Database)ABI3
DoCM (Curated mutations)ABI3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABI3 (select a term)
intoGenABI3
Cancer3DABI3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606363   
Orphanet
MedgenABI3
Genetic Testing Registry ABI3
NextProtQ9P2A4 [Medical]
TSGene51225
GENETestsABI3
Target ValidationABI3
Huge Navigator ABI3 [HugePedia]
snp3D : Map Gene to Disease51225
BioCentury BCIQABI3
ClinGenABI3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51225
Chemical/Pharm GKB GenePA134951642
Clinical trialABI3
Miscellaneous
canSAR (ICR)ABI3 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABI3
EVEXABI3
GoPubMedABI3
iHOPABI3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:22:23 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.