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ABI3BP (ABI family member 3 binding protein)

Identity

Alias (NCBI)NESHBP
TARSH
HGNC (Hugo) ABI3BP
HGNC Alias symbNESHBP
DKFZP586L2024
TARSH
HGNC Alias nametarget of Nesh-SH3
HGNC Previous nameABI family, member 3 (NESH) binding protein
LocusID (NCBI) 25890
Atlas_Id 46164
Location 3q12.2  [Link to chromosome band 3q12]
Location_base_pair Starts at 100749335 and ends at 100993421 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ABI3BP (3q12.2) / EXT2 (11p11.2)COL1A1 (17q21.33) / ABI3BP (3q12.2)PAXBP1 (21q22.11) / ABI3BP (3q12.2)
RPRD1A (18q12.2) / ABI3BP (3q12.2)TBC1D23 (3q12.1) / ABI3BP (3q12.2)GCFC1 ABI3BP 3q12.2
TBC1D23 3q12.1 / ABI3BP 3q12.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ABI3BP   17265
Cards
Entrez_Gene (NCBI)ABI3BP    ABI family member 3 binding protein
AliasesNESHBP; TARSH
GeneCards (Weizmann)ABI3BP
Ensembl hg19 (Hinxton)ENSG00000154175 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154175 [Gene_View]  ENSG00000154175 [Sequence]  chr3:100749335-100993421 [Contig_View]  ABI3BP [Vega]
ICGC DataPortalENSG00000154175
TCGA cBioPortalABI3BP
AceView (NCBI)ABI3BP
Genatlas (Paris)ABI3BP
SOURCE (Princeton)ABI3BP
Genetics Home Reference (NIH)ABI3BP
Genomic and cartography
GoldenPath hg38 (UCSC)ABI3BP  -     chr3:100749335-100993421 -  3q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABI3BP  -     3q12.2   [Description]    (hg19-Feb_2009)
GoldenPathABI3BP - 3q12.2 [CytoView hg19]  ABI3BP - 3q12.2 [CytoView hg38]
ImmunoBaseENSG00000154175
Genome Data Viewer NCBIABI3BP [Mapview hg19]  
OMIM606279   
Gene and transcription
Genbank (Entrez)AB056106 AK025204 AK093861 AK123737 AK123748
RefSeq transcript (Entrez)NM_001349329 NM_001349330 NM_001349331 NM_001349332 NM_001365642 NM_001365643 NM_001375547 NM_001375549 NM_001375550 NM_001377332 NM_015429
Consensus coding sequences : CCDS (NCBI)ABI3BP
Gene ExpressionABI3BP [ NCBI-GEO ]   ABI3BP [ EBI - ARRAY_EXPRESS ]   ABI3BP [ SEEK ]   ABI3BP [ MEM ]
Gene Expression Viewer (FireBrowse)ABI3BP [ Firebrowse - Broad ]
GenevisibleExpression of ABI3BP in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25890
GTEX Portal (Tissue expression)ABI3BP
Human Protein AtlasENSG00000154175-ABI3BP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z7G0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z7G0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z7G0
PhosPhoSitePlusQ7Z7G0
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)   
Domains : Interpro (EBI)FN3_dom    FN3_sf    Ig-like_fold   
Domain families : Pfam (Sanger)fn3 (PF00041)   
Domain families : Pfam (NCBI)pfam00041   
Domain families : Smart (EMBL)FN3 (SM00060)  
Conserved Domain (NCBI)ABI3BP
SuperfamilyQ7Z7G0
AlphaFold pdb e-kbQ7Z7G0   
Human Protein Atlas [tissue]ENSG00000154175-ABI3BP [tissue]
HPRD09380
Protein Interaction databases
DIP (DOE-UCLA)Q7Z7G0
IntAct (EBI)Q7Z7G0
BioGRIDABI3BP
STRING (EMBL)ABI3BP
ZODIACABI3BP
Ontologies - Pathways
QuickGOQ7Z7G0
Ontology : AmiGOextracellular matrix structural constituent  extracellular region  extracellular space  collagen-containing extracellular matrix  collagen-containing extracellular matrix  
Ontology : EGO-EBIextracellular matrix structural constituent  extracellular region  extracellular space  collagen-containing extracellular matrix  collagen-containing extracellular matrix  
NDEx NetworkABI3BP
Atlas of Cancer Signalling NetworkABI3BP
Wikipedia pathwaysABI3BP
Orthology - Evolution
OrthoDB25890
GeneTree (enSembl)ENSG00000154175
Phylogenetic Trees/Animal Genes : TreeFamABI3BP
Homologs : HomoloGeneABI3BP
Homology/Alignments : Family Browser (UCSC)ABI3BP
Gene fusions - Rearrangements
Fusion : MitelmanPAXBP1/ABI3BP [21q22.11/3q12.2]  
Fusion : MitelmanTBC1D23/ABI3BP [3q12.1/3q12.2]  
Fusion : QuiverABI3BP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABI3BP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABI3BP
dbVarABI3BP
ClinVarABI3BP
MonarchABI3BP
1000_GenomesABI3BP 
Exome Variant ServerABI3BP
GNOMAD BrowserENSG00000154175
Varsome BrowserABI3BP
ACMGABI3BP variants
VarityQ7Z7G0
Genomic Variants (DGV)ABI3BP [DGVbeta]
DECIPHERABI3BP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisABI3BP 
Mutations
ICGC Data PortalABI3BP 
TCGA Data PortalABI3BP 
Broad Tumor PortalABI3BP
OASIS PortalABI3BP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICABI3BP  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DABI3BP
Mutations and Diseases : HGMDABI3BP
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaABI3BP
DgiDB (Drug Gene Interaction Database)ABI3BP
DoCM (Curated mutations)ABI3BP
CIViC (Clinical Interpretations of Variants in Cancer)ABI3BP
Cancer3DABI3BP
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606279   
Orphanet
DisGeNETABI3BP
MedgenABI3BP
Genetic Testing Registry ABI3BP
NextProtQ7Z7G0 [Medical]
GENETestsABI3BP
Target ValidationABI3BP
Huge Navigator ABI3BP [HugePedia]
ClinGenABI3BP
Clinical trials, drugs, therapy
MyCancerGenomeABI3BP
Protein Interactions : CTDABI3BP
Pharm GKB GenePA134977769
PharosQ7Z7G0
Clinical trialABI3BP
Miscellaneous
canSAR (ICR)ABI3BP
HarmonizomeABI3BP
DataMed IndexABI3BP
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXABI3BP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 14:58:06 CEST 2021

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