Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ABI3BP (ABI family member 3 binding protein)

Identity

Alias_namesABI family
Alias_symbol (synonym)NESHBP
DKFZP586L2024
TARSH
Other alias
HGNC (Hugo) ABI3BP
LocusID (NCBI) 25890
Atlas_Id 46164
Location 3q12.2  [Link to chromosome band 3q12]
Location_base_pair Starts at 100468179 and ends at 100712334 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ABI3BP (3q12.2) / EXT2 (11p11.2)COL1A1 (17q21.33) / ABI3BP (3q12.2)PAXBP1 (21q22.11) / ABI3BP (3q12.2)
RPRD1A (18q12.2) / ABI3BP (3q12.2)TBC1D23 (3q12.1) / ABI3BP (3q12.2)GCFC1 ABI3BP 3q12.2
TBC1D23 3q12.1 / ABI3BP 3q12.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ABI3BP   17265
Cards
Entrez_Gene (NCBI)ABI3BP  25890  ABI family member 3 binding protein
AliasesNESHBP; TARSH
GeneCards (Weizmann)ABI3BP
Ensembl hg19 (Hinxton)ENSG00000154175 [Gene_View]  chr3:100468179-100712334 [Contig_View]  ABI3BP [Vega]
Ensembl hg38 (Hinxton)ENSG00000154175 [Gene_View]  chr3:100468179-100712334 [Contig_View]  ABI3BP [Vega]
ICGC DataPortalENSG00000154175
TCGA cBioPortalABI3BP
AceView (NCBI)ABI3BP
Genatlas (Paris)ABI3BP
WikiGenes25890
SOURCE (Princeton)ABI3BP
Genetics Home Reference (NIH)ABI3BP
Genomic and cartography
GoldenPath hg19 (UCSC)ABI3BP  -     chr3:100468179-100712334 -  3q12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ABI3BP  -     3q12.2   [Description]    (hg38-Dec_2013)
EnsemblABI3BP - 3q12.2 [CytoView hg19]  ABI3BP - 3q12.2 [CytoView hg38]
Mapping of homologs : NCBIABI3BP [Mapview hg19]  ABI3BP [Mapview hg38]
OMIM606279   
Gene and transcription
Genbank (Entrez)AB056106 AK025204 AK093861 AK123737 AK123748
RefSeq transcript (Entrez)NM_015429
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)ABI3BP
Cluster EST : UnigeneHs.477015 [ NCBI ]
CGAP (NCI)Hs.477015
Alternative Splicing GalleryENSG00000154175
Gene ExpressionABI3BP [ NCBI-GEO ]   ABI3BP [ EBI - ARRAY_EXPRESS ]   ABI3BP [ SEEK ]   ABI3BP [ MEM ]
Gene Expression Viewer (FireBrowse)ABI3BP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25890
GTEX Portal (Tissue expression)ABI3BP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z7G0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z7G0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z7G0
Splice isoforms : SwissVarQ7Z7G0
PhosPhoSitePlusQ7Z7G0
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)   
Domains : Interpro (EBI)FN3_dom    Ig-like_fold   
Domain families : Pfam (Sanger)fn3 (PF00041)   
Domain families : Pfam (NCBI)pfam00041   
Domain families : Smart (EMBL)FN3 (SM00060)  
Conserved Domain (NCBI)ABI3BP
DMDM Disease mutations25890
Blocks (Seattle)ABI3BP
SuperfamilyQ7Z7G0
Human Protein AtlasENSG00000154175
Peptide AtlasQ7Z7G0
HPRD09380
IPIIPI00440822   IPI00794737   IPI00440825   IPI00956440   IPI00419966   IPI00946615   IPI00947415   IPI00946806   IPI00946904   IPI00947247   IPI00946430   IPI00945632   IPI00945994   IPI00552992   IPI00980965   IPI00981400   IPI00979644   IPI00977175   IPI00978577   IPI00977861   IPI00981646   IPI00982686   IPI00980318   IPI00981975   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z7G0
IntAct (EBI)Q7Z7G0
FunCoupENSG00000154175
BioGRIDABI3BP
STRING (EMBL)ABI3BP
ZODIACABI3BP
Ontologies - Pathways
QuickGOQ7Z7G0
Ontology : AmiGOcollagen binding  interstitial matrix  extracellular space  heparin binding  positive regulation of cell-substrate adhesion  extracellular matrix organization  extracellular matrix  
Ontology : EGO-EBIcollagen binding  interstitial matrix  extracellular space  heparin binding  positive regulation of cell-substrate adhesion  extracellular matrix organization  extracellular matrix  
NDEx NetworkABI3BP
Atlas of Cancer Signalling NetworkABI3BP
Wikipedia pathwaysABI3BP
Orthology - Evolution
OrthoDB25890
GeneTree (enSembl)ENSG00000154175
Phylogenetic Trees/Animal Genes : TreeFamABI3BP
HOVERGENQ7Z7G0
HOGENOMQ7Z7G0
Homologs : HomoloGeneABI3BP
Homology/Alignments : Family Browser (UCSC)ABI3BP
Gene fusions - Rearrangements
Fusion : MitelmanPAXBP1/ABI3BP [21q22.11/3q12.2]  [t(3;21)(q12;q22)]  
Fusion : MitelmanTBC1D23/ABI3BP [3q12.1/3q12.2]  [t(3;3)(q12;q12)]  
Fusion: TCGAGCFC1 ABI3BP 3q12.2 BRCA
Fusion: TCGATBC1D23 3q12.1 ABI3BP 3q12.2 HNSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABI3BP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABI3BP
dbVarABI3BP
ClinVarABI3BP
1000_GenomesABI3BP 
Exome Variant ServerABI3BP
ExAC (Exome Aggregation Consortium)ABI3BP (select the gene name)
Genetic variants : HAPMAP25890
Genomic Variants (DGV)ABI3BP [DGVbeta]
DECIPHER (Syndromes)3:100468179-100712334  ENSG00000154175
CONAN: Copy Number AnalysisABI3BP 
Mutations
ICGC Data PortalABI3BP 
TCGA Data PortalABI3BP 
Broad Tumor PortalABI3BP
OASIS PortalABI3BP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICABI3BP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDABI3BP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ABI3BP
DgiDB (Drug Gene Interaction Database)ABI3BP
DoCM (Curated mutations)ABI3BP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABI3BP (select a term)
intoGenABI3BP
Cancer3DABI3BP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606279   
Orphanet
MedgenABI3BP
Genetic Testing Registry ABI3BP
NextProtQ7Z7G0 [Medical]
TSGene25890
GENETestsABI3BP
Huge Navigator ABI3BP [HugePedia]
snp3D : Map Gene to Disease25890
BioCentury BCIQABI3BP
ClinGenABI3BP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25890
Chemical/Pharm GKB GenePA134977769
Clinical trialABI3BP
Miscellaneous
canSAR (ICR)ABI3BP (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABI3BP
EVEXABI3BP
GoPubMedABI3BP
iHOPABI3BP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:54:31 CET 2017

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