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ABLIM1 (actin binding LIM protein 1)

Identity

Alias_namesLIMAB1
ABLIM
Alias_symbol (synonym)abLIM
limatin
Other aliasLIMATIN
abLIM-1
HGNC (Hugo) ABLIM1
LocusID (NCBI) 3983
Atlas_Id 548
Location 10q25.3  [Link to chromosome band 10q25]
Location_base_pair Starts at 114431110 and ends at 114684655 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ABLIM1 (10q25.3) / ABLIM1 (10q25.3)ABLIM1 (10q25.3) / AFAP1L2 (10q25.3)ABLIM1 (10q25.3) / AMBRA1 (11p11.2)
ABLIM1 (10q25.3) / MAPRE1 (20q11.21)ABLIM1 (10q25.3) / PTCD2 (5q13.2)ABLIM1 (10q25.3) / WBP2 (17q25.1)
ARID5B (10q21.2) / ABLIM1 (10q25.3)C9orf147 (9q32) / ABLIM1 (10q25.3)FRK (6q22.1) / ABLIM1 (10q25.3)
GOPC (6q22.1) / ABLIM1 (10q25.3)JAZF1-AS1 (7p15.1) / ABLIM1 (10q25.3)LOC100131060 () / ABLIM1 (10q25.3)
PDS5A (4p14) / ABLIM1 (10q25.3)PIP4K2A (10p12.2) / ABLIM1 (10q25.3)ABLIM1 10q25.3 / PTCD2 5q13.2
ARID5B 10q21.2 / ABLIM1 10q25.3GOPC 6q22.1 / ABLIM1 10q25.3PIP4K2A 10p12.2 / ABLIM1 10q25.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ABLIM1   78
Cards
Entrez_Gene (NCBI)ABLIM1  3983  actin binding LIM protein 1
AliasesABLIM; LIMAB1; LIMATIN; abLIM-1
GeneCards (Weizmann)ABLIM1
Ensembl hg19 (Hinxton)ENSG00000099204 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000099204 [Gene_View]  chr10:114431110-114684655 [Contig_View]  ABLIM1 [Vega]
ICGC DataPortalENSG00000099204
TCGA cBioPortalABLIM1
AceView (NCBI)ABLIM1
Genatlas (Paris)ABLIM1
WikiGenes3983
SOURCE (Princeton)ABLIM1
Genetics Home Reference (NIH)ABLIM1
Genomic and cartography
GoldenPath hg38 (UCSC)ABLIM1  -     chr10:114431110-114684655 -  10q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABLIM1  -     10q25.3   [Description]    (hg19-Feb_2009)
EnsemblABLIM1 - 10q25.3 [CytoView hg19]  ABLIM1 - 10q25.3 [CytoView hg38]
Mapping of homologs : NCBIABLIM1 [Mapview hg19]  ABLIM1 [Mapview hg38]
OMIM602330   
Gene and transcription
Genbank (Entrez)AA314019 AF005654 AI680726 AK054890 AK057834
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ABLIM1
Cluster EST : UnigeneHs.593868 [ NCBI ]
CGAP (NCI)Hs.593868
Alternative Splicing GalleryENSG00000099204
Gene ExpressionABLIM1 [ NCBI-GEO ]   ABLIM1 [ EBI - ARRAY_EXPRESS ]   ABLIM1 [ SEEK ]   ABLIM1 [ MEM ]
Gene Expression Viewer (FireBrowse)ABLIM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3983
GTEX Portal (Tissue expression)ABLIM1
Human Protein AtlasENSG00000099204-ABLIM1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14639   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14639  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14639
Splice isoforms : SwissVarO14639
PhosPhoSitePlusO14639
Domaine pattern : Prosite (Expaxy)HP (PS51089)    LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)   
Domains : Interpro (EBI)ABLIM1    AbLIM_anchor    Villin_headpiece    Znf_LIM   
Domain families : Pfam (Sanger)AbLIM_anchor (PF16182)    LIM (PF00412)    VHP (PF02209)   
Domain families : Pfam (NCBI)pfam16182    pfam00412    pfam02209   
Domain families : Smart (EMBL)LIM (SM00132)  VHP (SM00153)  
Conserved Domain (NCBI)ABLIM1
DMDM Disease mutations3983
Blocks (Seattle)ABLIM1
SuperfamilyO14639
Human Protein Atlas [tissue]ENSG00000099204-ABLIM1 [tissue]
Peptide AtlasO14639
HPRD03819
IPIIPI00329495   IPI00456617   IPI00551038   IPI00744789   IPI00883638   IPI00747332   IPI00940368   IPI00873424   IPI00922144   IPI01009888   IPI00916176   IPI00455786   IPI00515115   IPI00644747   IPI00937791   IPI00552818   
Protein Interaction databases
DIP (DOE-UCLA)O14639
IntAct (EBI)O14639
FunCoupENSG00000099204
BioGRIDABLIM1
STRING (EMBL)ABLIM1
ZODIACABLIM1
Ontologies - Pathways
QuickGOO14639
Ontology : AmiGOstress fiber  actin binding  protein binding  cytoplasm  cytoskeleton organization  visual perception  zinc ion binding  animal organ morphogenesis  actin cytoskeleton  lamellipodium  lamellipodium assembly  cilium assembly  
Ontology : EGO-EBIstress fiber  actin binding  protein binding  cytoplasm  cytoskeleton organization  visual perception  zinc ion binding  animal organ morphogenesis  actin cytoskeleton  lamellipodium  lamellipodium assembly  cilium assembly  
Pathways : KEGGAxon guidance   
NDEx NetworkABLIM1
Atlas of Cancer Signalling NetworkABLIM1
Wikipedia pathwaysABLIM1
Orthology - Evolution
OrthoDB3983
GeneTree (enSembl)ENSG00000099204
Phylogenetic Trees/Animal Genes : TreeFamABLIM1
HOVERGENO14639
HOGENOMO14639
Homologs : HomoloGeneABLIM1
Homology/Alignments : Family Browser (UCSC)ABLIM1
Gene fusions - Rearrangements
Fusion : MitelmanABLIM1/PTCD2 [10q25.3/5q13.2]  
Fusion : MitelmanARID5B/ABLIM1 [10q21.2/10q25.3]  [t(10;10)(q21;q25)]  
Fusion : MitelmanGOPC/ABLIM1 [6q22.1/10q25.3]  [t(6;10)(q22;q25)]  
Fusion : MitelmanPIP4K2A/ABLIM1 [10p12.2/10q25.3]  [t(10;10)(p12;q25)]  
Fusion: TCGA_MDACCABLIM1 10q25.3 PTCD2 5q13.2 BRCA
Fusion: TCGA_MDACCARID5B 10q21.2 ABLIM1 10q25.3 BRCA
Fusion: TCGA_MDACCGOPC 6q22.1 ABLIM1 10q25.3 BRCA
Fusion: TCGA_MDACCPIP4K2A 10p12.2 ABLIM1 10q25.3 KIRC
Tumor Fusion PortalABLIM1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABLIM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABLIM1
dbVarABLIM1
ClinVarABLIM1
1000_GenomesABLIM1 
Exome Variant ServerABLIM1
ExAC (Exome Aggregation Consortium)ENSG00000099204
GNOMAD BrowserENSG00000099204
Genetic variants : HAPMAP3983
Genomic Variants (DGV)ABLIM1 [DGVbeta]
DECIPHERABLIM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisABLIM1 
Mutations
ICGC Data PortalABLIM1 
TCGA Data PortalABLIM1 
Broad Tumor PortalABLIM1
OASIS PortalABLIM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICABLIM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDABLIM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ABLIM1
DgiDB (Drug Gene Interaction Database)ABLIM1
DoCM (Curated mutations)ABLIM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABLIM1 (select a term)
intoGenABLIM1
Cancer3DABLIM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602330   
Orphanet
DisGeNETABLIM1
MedgenABLIM1
Genetic Testing Registry ABLIM1
NextProtO14639 [Medical]
TSGene3983
GENETestsABLIM1
Target ValidationABLIM1
Huge Navigator ABLIM1 [HugePedia]
snp3D : Map Gene to Disease3983
BioCentury BCIQABLIM1
ClinGenABLIM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3983
Chemical/Pharm GKB GenePA35023
Clinical trialABLIM1
Miscellaneous
canSAR (ICR)ABLIM1 (select the gene name)
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABLIM1
EVEXABLIM1
GoPubMedABLIM1
iHOPABLIM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:01:43 CET 2017

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