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ABLIM1 (actin binding LIM protein 1)

Identity

Alias (NCBI)ABLIM
LIMAB1
LIMATIN
abLIM-1
HGNC (Hugo) ABLIM1
HGNC Alias symbabLIM
limatin
HGNC Previous nameLIMAB1
 ABLIM
LocusID (NCBI) 3983
Atlas_Id 548
Location 10q25.3  [Link to chromosome band 10q25]
Location_base_pair Starts at 114431112 and ends at 114526913 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ABLIM1 (10q25.3) / ABLIM1 (10q25.3)ABLIM1 (10q25.3) / AFAP1L2 (10q25.3)ABLIM1 (10q25.3) / AMBRA1 (11p11.2)
ABLIM1 (10q25.3) / MAPRE1 (20q11.21)ABLIM1 (10q25.3) / PTCD2 (5q13.2)ABLIM1 (10q25.3) / WBP2 (17q25.1)
ARID5B (10q21.2) / ABLIM1 (10q25.3)C9orf147 (9q32) / ABLIM1 (10q25.3)FRK (6q22.1) / ABLIM1 (10q25.3)
GOPC (6q22.1) / ABLIM1 (10q25.3)JAZF1-AS1 (7p15.1) / ABLIM1 (10q25.3)LOC100131060 () / ABLIM1 (10q25.3)
PDS5A (4p14) / ABLIM1 (10q25.3)PIP4K2A (10p12.2) / ABLIM1 (10q25.3)ABLIM1 10q25.3 / PTCD2 5q13.2
ARID5B 10q21.2 / ABLIM1 10q25.3GOPC 6q22.1 / ABLIM1 10q25.3PIP4K2A 10p12.2 / ABLIM1 10q25.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)ABLIM1   78
Cards
Entrez_Gene (NCBI)ABLIM1    actin binding LIM protein 1
AliasesABLIM; LIMAB1; LIMATIN; abLIM-1
GeneCards (Weizmann)ABLIM1
Ensembl hg19 (Hinxton)ENSG00000099204 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000099204 [Gene_View]  ENSG00000099204 [Sequence]  chr10:114431112-114526913 [Contig_View]  ABLIM1 [Vega]
ICGC DataPortalENSG00000099204
TCGA cBioPortalABLIM1
AceView (NCBI)ABLIM1
Genatlas (Paris)ABLIM1
SOURCE (Princeton)ABLIM1
Genetics Home Reference (NIH)ABLIM1
Genomic and cartography
GoldenPath hg38 (UCSC)ABLIM1  -     chr10:114431112-114526913 -  10q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABLIM1  -     10q25.3   [Description]    (hg19-Feb_2009)
GoldenPathABLIM1 - 10q25.3 [CytoView hg19]  ABLIM1 - 10q25.3 [CytoView hg38]
ImmunoBaseENSG00000099204
Genome Data Viewer NCBIABLIM1 [Mapview hg19]  
OMIM602330   
Gene and transcription
Genbank (Entrez)AA314019 AF005654 AI680726 AK054890 AK057834
RefSeq transcript (Entrez)NM_001003407 NM_001003408 NM_001322882 NM_001322883 NM_001322884 NM_001322885 NM_001322886 NM_001322887 NM_001322888 NM_001322889 NM_001322890 NM_001322891 NM_001322892 NM_001322893 NM_001322894 NM_001322895 NM_001322896 NM_001322897 NM_001322898 NM_001322899 NM_001322900 NM_001352440 NM_001352441 NM_001352442 NM_001352443 NM_002313 NM_006720
Consensus coding sequences : CCDS (NCBI)ABLIM1
Gene ExpressionABLIM1 [ NCBI-GEO ]   ABLIM1 [ EBI - ARRAY_EXPRESS ]   ABLIM1 [ SEEK ]   ABLIM1 [ MEM ]
Gene Expression Viewer (FireBrowse)ABLIM1 [ Firebrowse - Broad ]
GenevisibleExpression of ABLIM1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3983
GTEX Portal (Tissue expression)ABLIM1
Human Protein AtlasENSG00000099204-ABLIM1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ABLIM1
Human Protein Atlas [tissue]ENSG00000099204-ABLIM1 [tissue]
HPRD03819
Protein Interaction databases
BioGRIDABLIM1
STRING (EMBL)ABLIM1
ZODIACABLIM1
Ontologies - Pathways
Litterature
PubMed72 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXABLIM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 14:58:06 CEST 2021

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