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ABLIM3 (actin binding LIM protein family member 3)

Identity

Alias_namesactin binding LIM protein family, member 3
Alias_symbol (synonym)KIAA0843
Other aliasHMFN1661
HGNC (Hugo) ABLIM3
LocusID (NCBI) 22885
Atlas_Id 60064
Location 5q32  [Link to chromosome band 5q32]
Location_base_pair Starts at 149141447 and ends at 149260438 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ABLIM3 (5q32) / ALB (4q13.3)ABLIM3 (5q32) / CDK14 (7q21.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

WikiGenes
Nomenclature
HGNC (Hugo)ABLIM3   29132
Cards
Entrez_Gene (NCBI)ABLIM3  22885  actin binding LIM protein family member 3
AliasesHMFN1661
GeneCards (Weizmann)ABLIM3
Ensembl hg19 (Hinxton)ENSG00000173210 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173210 [Gene_View]  chr5:149141447-149260438 [Contig_View]  ABLIM3 [Vega]
ICGC DataPortalENSG00000173210
TCGA cBioPortalABLIM3
AceView (NCBI)ABLIM3
Genatlas (Paris)ABLIM3
22885
SOURCE (Princeton)ABLIM3
Genetics Home Reference (NIH)ABLIM3
Genomic and cartography
GoldenPath hg38 (UCSC)ABLIM3  -     chr5:149141447-149260438 +  5q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABLIM3  -     5q32   [Description]    (hg19-Feb_2009)
EnsemblABLIM3 - 5q32 [CytoView hg19]  ABLIM3 - 5q32 [CytoView hg38]
Mapping of homologs : NCBIABLIM3 [Mapview hg19]  ABLIM3 [Mapview hg38]
OMIM611305   
Gene and transcription
Genbank (Entrez)AB020650 AB075881 AK098469 AK225769 AK289736
RefSeq transcript (Entrez)NM_001301015 NM_001301018 NM_001301027 NM_001301028 NM_001345858 NM_001345859 NM_001345860 NM_001345861 NM_014945
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ABLIM3
Cluster EST : UnigeneHs.49688 [ NCBI ]
CGAP (NCI)Hs.49688
Alternative Splicing GalleryENSG00000173210
Gene ExpressionABLIM3 [ NCBI-GEO ]   ABLIM3 [ EBI - ARRAY_EXPRESS ]   ABLIM3 [ SEEK ]   ABLIM3 [ MEM ]
Gene Expression Viewer (FireBrowse)ABLIM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22885
GTEX Portal (Tissue expression)ABLIM3
Protein : pattern, domain, 3D structure
UniProt/SwissProtO94929   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO94929  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO94929
Splice isoforms : SwissVarO94929
PhosPhoSitePlusO94929
Domaine pattern : Prosite (Expaxy)HP (PS51089)    LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)   
Domains : Interpro (EBI)ABLIM3    AbLIM_anchor    Villin_headpiece    Znf_LIM   
Domain families : Pfam (Sanger)AbLIM_anchor (PF16182)    LIM (PF00412)    VHP (PF02209)   
Domain families : Pfam (NCBI)pfam16182    pfam00412    pfam02209   
Domain families : Smart (EMBL)LIM (SM00132)  VHP (SM00153)  
Conserved Domain (NCBI)ABLIM3
DMDM Disease mutations22885
Blocks (Seattle)ABLIM3
PDB (SRS)1UJS    2DJ7   
PDB (PDBSum)1UJS    2DJ7   
PDB (IMB)1UJS    2DJ7   
PDB (RSDB)1UJS    2DJ7   
Structural Biology KnowledgeBase1UJS    2DJ7   
SCOP (Structural Classification of Proteins)1UJS    2DJ7   
CATH (Classification of proteins structures)1UJS    2DJ7   
SuperfamilyO94929
Human Protein AtlasENSG00000173210
Peptide AtlasO94929
HPRD12411
IPIIPI00185892   IPI00477229   IPI00478204   IPI00478567   IPI00965223   IPI00967100   
Protein Interaction databases
DIP (DOE-UCLA)O94929
IntAct (EBI)O94929
FunCoupENSG00000173210
BioGRIDABLIM3
STRING (EMBL)ABLIM3
ZODIACABLIM3
Ontologies - Pathways
QuickGOO94929
Ontology : AmiGOstress fiber  actin binding  protein binding  cytoplasm  transcription, DNA-templated  zinc ion binding  lamellipodium  lamellipodium assembly  actin cytoskeleton organization  positive regulation of transcription from RNA polymerase II promoter  cilium assembly  positive regulation of protein targeting to mitochondrion  
Ontology : EGO-EBIstress fiber  actin binding  protein binding  cytoplasm  transcription, DNA-templated  zinc ion binding  lamellipodium  lamellipodium assembly  actin cytoskeleton organization  positive regulation of transcription from RNA polymerase II promoter  cilium assembly  positive regulation of protein targeting to mitochondrion  
Pathways : KEGGAxon guidance   
NDEx NetworkABLIM3
Atlas of Cancer Signalling NetworkABLIM3
Wikipedia pathwaysABLIM3
Orthology - Evolution
OrthoDB22885
GeneTree (enSembl)ENSG00000173210
Phylogenetic Trees/Animal Genes : TreeFamABLIM3
HOVERGENO94929
HOGENOMO94929
Homologs : HomoloGeneABLIM3
Homology/Alignments : Family Browser (UCSC)ABLIM3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABLIM3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABLIM3
dbVarABLIM3
ClinVarABLIM3
1000_GenomesABLIM3 
Exome Variant ServerABLIM3
ExAC (Exome Aggregation Consortium)ABLIM3 (select the gene name)
Genetic variants : HAPMAP22885
Genomic Variants (DGV)ABLIM3 [DGVbeta]
DECIPHERABLIM3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisABLIM3 
Mutations
ICGC Data PortalABLIM3 
TCGA Data PortalABLIM3 
Broad Tumor PortalABLIM3
OASIS PortalABLIM3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICABLIM3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDABLIM3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ABLIM3
DgiDB (Drug Gene Interaction Database)ABLIM3
DoCM (Curated mutations)ABLIM3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABLIM3 (select a term)
intoGenABLIM3
Cancer3DABLIM3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611305   
Orphanet
MedgenABLIM3
Genetic Testing Registry ABLIM3
NextProtO94929 [Medical]
TSGene22885
GENETestsABLIM3
Target ValidationABLIM3
Huge Navigator ABLIM3 [HugePedia]
snp3D : Map Gene to Disease22885
BioCentury BCIQABLIM3
ClinGenABLIM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22885
Chemical/Pharm GKB GenePA134962761
Clinical trialABLIM3
Miscellaneous
canSAR (ICR)ABLIM3 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABLIM3
EVEXABLIM3
GoPubMedABLIM3
iHOPABLIM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:00:42 CEST 2017

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