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ABO (ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase))

Identity

Alias_symbol (synonym)A3GALNT
A3GALT1
Other aliasGTB
NAGAT
HGNC (Hugo) ABO
LocusID (NCBI) 28
Atlas_Id 46430
Location 9q34.2  [Link to chromosome band 9q34]
Location_base_pair Starts at 136130563 and ends at 136150630 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ABO   79
LRG (Locus Reference Genomic)LRG_792
Cards
Entrez_Gene (NCBI)ABO  28  ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase)
AliasesA3GALNT; A3GALT1; GTB; NAGAT
GeneCards (Weizmann)ABO
Ensembl hg19 (Hinxton)ENSG00000175164 [Gene_View]  chr9:136130563-136150630 [Contig_View]  ABO [Vega]
Ensembl hg38 (Hinxton)ENSG00000175164 [Gene_View]  chr9:136130563-136150630 [Contig_View]  ABO [Vega]
ICGC DataPortalENSG00000175164
TCGA cBioPortalABO
AceView (NCBI)ABO
Genatlas (Paris)ABO
WikiGenes28
SOURCE (Princeton)ABO
Genetics Home Reference (NIH)ABO
Genomic and cartography
GoldenPath hg19 (UCSC)ABO  -     chr9:136130563-136150630 -  9q34.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ABO  -     9q34.2   [Description]    (hg38-Dec_2013)
EnsemblABO - 9q34.2 [CytoView hg19]  ABO - 9q34.2 [CytoView hg38]
Mapping of homologs : NCBIABO [Mapview hg19]  ABO [Mapview hg38]
OMIM110300   616093   
Gene and transcription
Genbank (Entrez)AF134412 AF134413 AF134414 AF134415 AF134416
RefSeq transcript (Entrez)NM_020469
RefSeq genomic (Entrez)NC_000009 NC_018920 NG_006669 NT_008470 NW_004929367 NW_009646201
Consensus coding sequences : CCDS (NCBI)ABO
Cluster EST : UnigeneHs.654423 [ NCBI ]
CGAP (NCI)Hs.654423
Alternative Splicing GalleryENSG00000175164
Gene ExpressionABO [ NCBI-GEO ]   ABO [ EBI - ARRAY_EXPRESS ]   ABO [ SEEK ]   ABO [ MEM ]
Gene Expression Viewer (FireBrowse)ABO [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28
GTEX Portal (Tissue expression)ABO
Protein : pattern, domain, 3D structure
UniProt/SwissProtP16442   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP16442  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP16442
Splice isoforms : SwissVarP16442
PhosPhoSitePlusP16442
Domains : Interpro (EBI)Glyco_trans_6    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)Glyco_transf_6 (PF03414)   
Domain families : Pfam (NCBI)pfam03414   
Conserved Domain (NCBI)ABO
DMDM Disease mutations28
Blocks (Seattle)ABO
PDB (SRS)1LZ0    1LZ7    1LZI    1LZJ    1R7T    1R7U    1R7V    1R7X    1R7Y    1R80    1R81    1R82    1WSZ    1WT0    1WT1    1WT2    1WT3    1XZ6    1ZHJ    1ZI1    1ZI3    1ZI4    1ZI5    1ZIZ    1ZJ0    1ZJ1    1ZJ2    1ZJ3    1ZJO    1ZJP    2A8U    2A8W    2I7B    2O1F    2O1G    2O1H    2PGV    2PGY    2RIT    2RIX    2RIY    2RIZ    2RJ0    2RJ1    2RJ4    2RJ5    2RJ6    2RJ7    2RJ8    2RJ9    2Y7A    3I0C    3I0D    3I0E    3I0F    3I0G    3I0H    3I0I    3I0J    3I0K    3I0L    3IOH    3IOI    3IOJ    3SX3    3SX5    3SX7    3SX8    3SXA    3SXB    3SXC    3SXD    3SXE    3SXG    3U0X    3U0Y    3V0L    3V0M    3V0N    3V0O    3V0P    3V0Q    3ZGF    3ZGG    4C2S    4FQW    4FRA    4FRB    4FRD    4FRE    4FRH    4FRL    4FRM    4FRO    4FRP    4FRQ    4GBP    4KC1    4KC2    4KC4    4KXO    4Y62    4Y63    4Y64    5BXC    5C1G    5C1H    5C1L    5C36    5C38    5C3A    5C3B    5C3D    5C47    5C48    5C49    5C4B    5C4C    5C4D    5C4E    5C4F    5C8R   
PDB (PDBSum)1LZ0    1LZ7    1LZI    1LZJ    1R7T    1R7U    1R7V    1R7X    1R7Y    1R80    1R81    1R82    1WSZ    1WT0    1WT1    1WT2    1WT3    1XZ6    1ZHJ    1ZI1    1ZI3    1ZI4    1ZI5    1ZIZ    1ZJ0    1ZJ1    1ZJ2    1ZJ3    1ZJO    1ZJP    2A8U    2A8W    2I7B    2O1F    2O1G    2O1H    2PGV    2PGY    2RIT    2RIX    2RIY    2RIZ    2RJ0    2RJ1    2RJ4    2RJ5    2RJ6    2RJ7    2RJ8    2RJ9    2Y7A    3I0C    3I0D    3I0E    3I0F    3I0G    3I0H    3I0I    3I0J    3I0K    3I0L    3IOH    3IOI    3IOJ    3SX3    3SX5    3SX7    3SX8    3SXA    3SXB    3SXC    3SXD    3SXE    3SXG    3U0X    3U0Y    3V0L    3V0M    3V0N    3V0O    3V0P    3V0Q    3ZGF    3ZGG    4C2S    4FQW    4FRA    4FRB    4FRD    4FRE    4FRH    4FRL    4FRM    4FRO    4FRP    4FRQ    4GBP    4KC1    4KC2    4KC4    4KXO    4Y62    4Y63    4Y64    5BXC    5C1G    5C1H    5C1L    5C36    5C38    5C3A    5C3B    5C3D    5C47    5C48    5C49    5C4B    5C4C    5C4D    5C4E    5C4F    5C8R   
PDB (IMB)1LZ0    1LZ7    1LZI    1LZJ    1R7T    1R7U    1R7V    1R7X    1R7Y    1R80    1R81    1R82    1WSZ    1WT0    1WT1    1WT2    1WT3    1XZ6    1ZHJ    1ZI1    1ZI3    1ZI4    1ZI5    1ZIZ    1ZJ0    1ZJ1    1ZJ2    1ZJ3    1ZJO    1ZJP    2A8U    2A8W    2I7B    2O1F    2O1G    2O1H    2PGV    2PGY    2RIT    2RIX    2RIY    2RIZ    2RJ0    2RJ1    2RJ4    2RJ5    2RJ6    2RJ7    2RJ8    2RJ9    2Y7A    3I0C    3I0D    3I0E    3I0F    3I0G    3I0H    3I0I    3I0J    3I0K    3I0L    3IOH    3IOI    3IOJ    3SX3    3SX5    3SX7    3SX8    3SXA    3SXB    3SXC    3SXD    3SXE    3SXG    3U0X    3U0Y    3V0L    3V0M    3V0N    3V0O    3V0P    3V0Q    3ZGF    3ZGG    4C2S    4FQW    4FRA    4FRB    4FRD    4FRE    4FRH    4FRL    4FRM    4FRO    4FRP    4FRQ    4GBP    4KC1    4KC2    4KC4    4KXO    4Y62    4Y63    4Y64    5BXC    5C1G    5C1H    5C1L    5C36    5C38    5C3A    5C3B    5C3D    5C47    5C48    5C49    5C4B    5C4C    5C4D    5C4E    5C4F    5C8R   
PDB (RSDB)1LZ0    1LZ7    1LZI    1LZJ    1R7T    1R7U    1R7V    1R7X    1R7Y    1R80    1R81    1R82    1WSZ    1WT0    1WT1    1WT2    1WT3    1XZ6    1ZHJ    1ZI1    1ZI3    1ZI4    1ZI5    1ZIZ    1ZJ0    1ZJ1    1ZJ2    1ZJ3    1ZJO    1ZJP    2A8U    2A8W    2I7B    2O1F    2O1G    2O1H    2PGV    2PGY    2RIT    2RIX    2RIY    2RIZ    2RJ0    2RJ1    2RJ4    2RJ5    2RJ6    2RJ7    2RJ8    2RJ9    2Y7A    3I0C    3I0D    3I0E    3I0F    3I0G    3I0H    3I0I    3I0J    3I0K    3I0L    3IOH    3IOI    3IOJ    3SX3    3SX5    3SX7    3SX8    3SXA    3SXB    3SXC    3SXD    3SXE    3SXG    3U0X    3U0Y    3V0L    3V0M    3V0N    3V0O    3V0P    3V0Q    3ZGF    3ZGG    4C2S    4FQW    4FRA    4FRB    4FRD    4FRE    4FRH    4FRL    4FRM    4FRO    4FRP    4FRQ    4GBP    4KC1    4KC2    4KC4    4KXO    4Y62    4Y63    4Y64    5BXC    5C1G    5C1H    5C1L    5C36    5C38    5C3A    5C3B    5C3D    5C47    5C48    5C49    5C4B    5C4C    5C4D    5C4E    5C4F    5C8R   
Structural Biology KnowledgeBase1LZ0    1LZ7    1LZI    1LZJ    1R7T    1R7U    1R7V    1R7X    1R7Y    1R80    1R81    1R82    1WSZ    1WT0    1WT1    1WT2    1WT3    1XZ6    1ZHJ    1ZI1    1ZI3    1ZI4    1ZI5    1ZIZ    1ZJ0    1ZJ1    1ZJ2    1ZJ3    1ZJO    1ZJP    2A8U    2A8W    2I7B    2O1F    2O1G    2O1H    2PGV    2PGY    2RIT    2RIX    2RIY    2RIZ    2RJ0    2RJ1    2RJ4    2RJ5    2RJ6    2RJ7    2RJ8    2RJ9    2Y7A    3I0C    3I0D    3I0E    3I0F    3I0G    3I0H    3I0I    3I0J    3I0K    3I0L    3IOH    3IOI    3IOJ    3SX3    3SX5    3SX7    3SX8    3SXA    3SXB    3SXC    3SXD    3SXE    3SXG    3U0X    3U0Y    3V0L    3V0M    3V0N    3V0O    3V0P    3V0Q    3ZGF    3ZGG    4C2S    4FQW    4FRA    4FRB    4FRD    4FRE    4FRH    4FRL    4FRM    4FRO    4FRP    4FRQ    4GBP    4KC1    4KC2    4KC4    4KXO    4Y62    4Y63    4Y64    5BXC    5C1G    5C1H    5C1L    5C36    5C38    5C3A    5C3B    5C3D    5C47    5C48    5C49    5C4B    5C4C    5C4D    5C4E    5C4F    5C8R   
SCOP (Structural Classification of Proteins)1LZ0    1LZ7    1LZI    1LZJ    1R7T    1R7U    1R7V    1R7X    1R7Y    1R80    1R81    1R82    1WSZ    1WT0    1WT1    1WT2    1WT3    1XZ6    1ZHJ    1ZI1    1ZI3    1ZI4    1ZI5    1ZIZ    1ZJ0    1ZJ1    1ZJ2    1ZJ3    1ZJO    1ZJP    2A8U    2A8W    2I7B    2O1F    2O1G    2O1H    2PGV    2PGY    2RIT    2RIX    2RIY    2RIZ    2RJ0    2RJ1    2RJ4    2RJ5    2RJ6    2RJ7    2RJ8    2RJ9    2Y7A    3I0C    3I0D    3I0E    3I0F    3I0G    3I0H    3I0I    3I0J    3I0K    3I0L    3IOH    3IOI    3IOJ    3SX3    3SX5    3SX7    3SX8    3SXA    3SXB    3SXC    3SXD    3SXE    3SXG    3U0X    3U0Y    3V0L    3V0M    3V0N    3V0O    3V0P    3V0Q    3ZGF    3ZGG    4C2S    4FQW    4FRA    4FRB    4FRD    4FRE    4FRH    4FRL    4FRM    4FRO    4FRP    4FRQ    4GBP    4KC1    4KC2    4KC4    4KXO    4Y62    4Y63    4Y64    5BXC    5C1G    5C1H    5C1L    5C36    5C38    5C3A    5C3B    5C3D    5C47    5C48    5C49    5C4B    5C4C    5C4D    5C4E    5C4F    5C8R   
CATH (Classification of proteins structures)1LZ0    1LZ7    1LZI    1LZJ    1R7T    1R7U    1R7V    1R7X    1R7Y    1R80    1R81    1R82    1WSZ    1WT0    1WT1    1WT2    1WT3    1XZ6    1ZHJ    1ZI1    1ZI3    1ZI4    1ZI5    1ZIZ    1ZJ0    1ZJ1    1ZJ2    1ZJ3    1ZJO    1ZJP    2A8U    2A8W    2I7B    2O1F    2O1G    2O1H    2PGV    2PGY    2RIT    2RIX    2RIY    2RIZ    2RJ0    2RJ1    2RJ4    2RJ5    2RJ6    2RJ7    2RJ8    2RJ9    2Y7A    3I0C    3I0D    3I0E    3I0F    3I0G    3I0H    3I0I    3I0J    3I0K    3I0L    3IOH    3IOI    3IOJ    3SX3    3SX5    3SX7    3SX8    3SXA    3SXB    3SXC    3SXD    3SXE    3SXG    3U0X    3U0Y    3V0L    3V0M    3V0N    3V0O    3V0P    3V0Q    3ZGF    3ZGG    4C2S    4FQW    4FRA    4FRB    4FRD    4FRE    4FRH    4FRL    4FRM    4FRO    4FRP    4FRQ    4GBP    4KC1    4KC2    4KC4    4KXO    4Y62    4Y63    4Y64    5BXC    5C1G    5C1H    5C1L    5C36    5C38    5C3A    5C3B    5C3D    5C47    5C48    5C49    5C4B    5C4C    5C4D    5C4E    5C4F    5C8R   
SuperfamilyP16442
Human Protein AtlasENSG00000175164
Peptide AtlasP16442
HPRD05821
IPIIPI00929248   IPI01026153   IPI00420082   IPI00878299   IPI00816081   IPI00816113   IPI00921878   
Protein Interaction databases
DIP (DOE-UCLA)P16442
IntAct (EBI)P16442
FunCoupENSG00000175164
BioGRIDABO
STRING (EMBL)ABO
ZODIACABO
Ontologies - Pathways
QuickGOP16442
Ontology : AmiGOglycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity  fucosylgalactoside 3-alpha-galactosyltransferase activity  extracellular region  protein glycosylation  integral component of membrane  Golgi cisterna membrane  metal ion binding  
Ontology : EGO-EBIglycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity  fucosylgalactoside 3-alpha-galactosyltransferase activity  extracellular region  protein glycosylation  integral component of membrane  Golgi cisterna membrane  metal ion binding  
Pathways : KEGGGlycosphingolipid biosynthesis - lacto and neolacto series   
NDEx NetworkABO
Atlas of Cancer Signalling NetworkABO
Wikipedia pathwaysABO
Orthology - Evolution
OrthoDB28
GeneTree (enSembl)ENSG00000175164
Phylogenetic Trees/Animal Genes : TreeFamABO
HOVERGENP16442
HOGENOMP16442
Homologs : HomoloGeneABO
Homology/Alignments : Family Browser (UCSC)ABO
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABO [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABO
dbVarABO
ClinVarABO
1000_GenomesABO 
Exome Variant ServerABO
ExAC (Exome Aggregation Consortium)ABO (select the gene name)
Genetic variants : HAPMAP28
Genomic Variants (DGV)ABO [DGVbeta]
DECIPHER (Syndromes)9:136130563-136150630  ENSG00000175164
CONAN: Copy Number AnalysisABO 
Mutations
ICGC Data PortalABO 
TCGA Data PortalABO 
Broad Tumor PortalABO
OASIS PortalABO [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICABO  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDABO
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
BioMutasearch ABO
DgiDB (Drug Gene Interaction Database)ABO
DoCM (Curated mutations)ABO (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABO (select a term)
intoGenABO
Cancer3DABO(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM110300    616093   
Orphanet
MedgenABO
Genetic Testing Registry ABO
NextProtP16442 [Medical]
TSGene28
GENETestsABO
Huge Navigator ABO [HugePedia]
snp3D : Map Gene to Disease28
BioCentury BCIQABO
ClinGenABO
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28
Chemical/Pharm GKB GenePA24415
Clinical trialABO
Miscellaneous
canSAR (ICR)ABO (select the gene name)
Probes
Litterature
PubMed236 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABO
EVEXABO
GoPubMedABO
iHOPABO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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