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ABO (ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase)

Identity

Alias_symbol (synonym)A3GALNT
A3GALT1
Other aliasGTB
NAGAT
HGNC (Hugo) ABO
LocusID (NCBI) 28
Atlas_Id 46430
Location 9q34.2  [Link to chromosome band 9q34]
Location_base_pair Starts at 133255176 and ends at 133275214 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ABO   79
LRG (Locus Reference Genomic)LRG_792
Cards
Entrez_Gene (NCBI)ABO  28  ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase
AliasesA3GALNT; A3GALT1; GTB; NAGAT
GeneCards (Weizmann)ABO
Ensembl hg19 (Hinxton)ENSG00000175164 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175164 [Gene_View]  chr9:133255176-133275214 [Contig_View]  ABO [Vega]
ICGC DataPortalENSG00000175164
TCGA cBioPortalABO
AceView (NCBI)ABO
Genatlas (Paris)ABO
WikiGenes28
SOURCE (Princeton)ABO
Genetics Home Reference (NIH)ABO
Genomic and cartography
GoldenPath hg38 (UCSC)ABO  -     chr9:133255176-133275214 -  9q34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABO  -     9q34.2   [Description]    (hg19-Feb_2009)
EnsemblABO - 9q34.2 [CytoView hg19]  ABO - 9q34.2 [CytoView hg38]
Mapping of homologs : NCBIABO [Mapview hg19]  ABO [Mapview hg38]
OMIM110300   616093   
Gene and transcription
Genbank (Entrez)AF134412 AF134413 AF134414 AF134415 AF134416
RefSeq transcript (Entrez)NM_020469
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ABO
Cluster EST : UnigeneHs.654423 [ NCBI ]
CGAP (NCI)Hs.654423
Alternative Splicing GalleryENSG00000175164
Gene ExpressionABO [ NCBI-GEO ]   ABO [ EBI - ARRAY_EXPRESS ]   ABO [ SEEK ]   ABO [ MEM ]
Gene Expression Viewer (FireBrowse)ABO [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28
GTEX Portal (Tissue expression)ABO
Protein : pattern, domain, 3D structure
UniProt/SwissProtP16442   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP16442  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP16442
Splice isoforms : SwissVarP16442
PhosPhoSitePlusP16442
Domains : Interpro (EBI)Glyco_trans_6    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)Glyco_transf_6 (PF03414)   
Domain families : Pfam (NCBI)pfam03414   
Conserved Domain (NCBI)ABO
DMDM Disease mutations28
Blocks (Seattle)ABO
PDB (SRS)###############################################################################################################################################################################################################################################################   
PDB (PDBSum)###############################################################################################################################################################################################################################################################   
PDB (IMB)###############################################################################################################################################################################################################################################################   
PDB (RSDB)###############################################################################################################################################################################################################################################################   
Structural Biology KnowledgeBase###############################################################################################################################################################################################################################################################   
SCOP (Structural Classification of Proteins)###############################################################################################################################################################################################################################################################   
CATH (Classification of proteins structures)###############################################################################################################################################################################################################################################################   
SuperfamilyP16442
Human Protein AtlasENSG00000175164
Peptide AtlasP16442
HPRD05821
IPIIPI00929248   IPI01026153   IPI00420082   IPI00878299   IPI00816081   IPI00816113   IPI00921878   
Protein Interaction databases
DIP (DOE-UCLA)P16442
IntAct (EBI)P16442
FunCoupENSG00000175164
BioGRIDABO
STRING (EMBL)ABO
ZODIACABO
Ontologies - Pathways
QuickGOP16442
Ontology : AmiGOnucleotide binding  antigen binding  glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity  fucosylgalactoside 3-alpha-galactosyltransferase activity  extracellular region  Golgi apparatus  carbohydrate metabolic process  protein glycosylation  glycolipid biosynthetic process  integral component of membrane  transferase activity, transferring glycosyl groups  manganese ion binding  lipid glycosylation  vesicle  Golgi cisterna membrane  
Ontology : EGO-EBInucleotide binding  antigen binding  glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity  fucosylgalactoside 3-alpha-galactosyltransferase activity  extracellular region  Golgi apparatus  carbohydrate metabolic process  protein glycosylation  glycolipid biosynthetic process  integral component of membrane  transferase activity, transferring glycosyl groups  manganese ion binding  lipid glycosylation  vesicle  Golgi cisterna membrane  
Pathways : KEGGGlycosphingolipid biosynthesis - lacto and neolacto series   
NDEx NetworkABO
Atlas of Cancer Signalling NetworkABO
Wikipedia pathwaysABO
Orthology - Evolution
OrthoDB28
GeneTree (enSembl)ENSG00000175164
Phylogenetic Trees/Animal Genes : TreeFamABO
HOVERGENP16442
HOGENOMP16442
Homologs : HomoloGeneABO
Homology/Alignments : Family Browser (UCSC)ABO
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABO [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABO
dbVarABO
ClinVarABO
1000_GenomesABO 
Exome Variant ServerABO
ExAC (Exome Aggregation Consortium)ABO (select the gene name)
Genetic variants : HAPMAP28
Genomic Variants (DGV)ABO [DGVbeta]
DECIPHERABO [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisABO 
Mutations
ICGC Data PortalABO 
TCGA Data PortalABO 
Broad Tumor PortalABO
OASIS PortalABO [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICABO  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDABO
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
BioMutasearch ABO
DgiDB (Drug Gene Interaction Database)ABO
DoCM (Curated mutations)ABO (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABO (select a term)
intoGenABO
Cancer3DABO(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM110300    616093   
Orphanet
MedgenABO
Genetic Testing Registry ABO
NextProtP16442 [Medical]
TSGene28
GENETestsABO
Target ValidationABO
Huge Navigator ABO [HugePedia]
snp3D : Map Gene to Disease28
BioCentury BCIQABO
ClinGenABO
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28
Chemical/Pharm GKB GenePA24415
Clinical trialABO
Miscellaneous
canSAR (ICR)ABO (select the gene name)
Probes
Litterature
PubMed241 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABO
EVEXABO
GoPubMedABO
iHOPABO
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:22:24 CEST 2017

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