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ABRA (actin binding Rho activating protein)

Identity

Alias_symbol (synonym)STARS
Other alias
HGNC (Hugo) ABRA
LocusID (NCBI) 137735
Atlas_Id 43069
Location 8q23.1  [Link to chromosome band 8q23]
Location_base_pair Starts at 106759483 and ends at 106770244 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ABRA   30655
Cards
Entrez_Gene (NCBI)ABRA  137735  actin binding Rho activating protein
AliasesSTARS
GeneCards (Weizmann)ABRA
Ensembl hg19 (Hinxton)ENSG00000174429 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174429 [Gene_View]  chr8:106759483-106770244 [Contig_View]  ABRA [Vega]
ICGC DataPortalENSG00000174429
TCGA cBioPortalABRA
AceView (NCBI)ABRA
Genatlas (Paris)ABRA
WikiGenes137735
SOURCE (Princeton)ABRA
Genetics Home Reference (NIH)ABRA
Genomic and cartography
GoldenPath hg38 (UCSC)ABRA  -     chr8:106759483-106770244 -  8q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABRA  -     8q23.1   [Description]    (hg19-Feb_2009)
EnsemblABRA - 8q23.1 [CytoView hg19]  ABRA - 8q23.1 [CytoView hg38]
Mapping of homologs : NCBIABRA [Mapview hg19]  ABRA [Mapview hg38]
OMIM609747   
Gene and transcription
Genbank (Entrez)AF503617 AK056976 AK092694 AL832152 AL833422
RefSeq transcript (Entrez)NM_139166
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ABRA
Cluster EST : UnigeneHs.374668 [ NCBI ]
CGAP (NCI)Hs.374668
Alternative Splicing GalleryENSG00000174429
Gene ExpressionABRA [ NCBI-GEO ]   ABRA [ EBI - ARRAY_EXPRESS ]   ABRA [ SEEK ]   ABRA [ MEM ]
Gene Expression Viewer (FireBrowse)ABRA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)137735
GTEX Portal (Tissue expression)ABRA
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N0Z2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N0Z2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N0Z2
Splice isoforms : SwissVarQ8N0Z2
PhosPhoSitePlusQ8N0Z2
Domains : Interpro (EBI)Abra    Costars_dom   
Domain families : Pfam (Sanger)Costars (PF14705)   
Domain families : Pfam (NCBI)pfam14705   
Domain families : Smart (EMBL)Costars (SM01283)  
Conserved Domain (NCBI)ABRA
DMDM Disease mutations137735
Blocks (Seattle)ABRA
SuperfamilyQ8N0Z2
Human Protein AtlasENSG00000174429
Peptide AtlasQ8N0Z2
HPRD11608
IPIIPI00166119   
Protein Interaction databases
DIP (DOE-UCLA)Q8N0Z2
IntAct (EBI)Q8N0Z2
FunCoupENSG00000174429
BioGRIDABRA
STRING (EMBL)ABRA
ZODIACABRA
Ontologies - Pathways
QuickGOQ8N0Z2
Ontology : AmiGOprotein import into nucleus, translocation  actin binding  plasma membrane  transcription, DNA-templated  actin cytoskeleton  sarcomere  positive regulation of Rho protein signal transduction  positive regulation of transcription from RNA polymerase II promoter  positive regulation of sequence-specific DNA binding transcription factor activity  
Ontology : EGO-EBIprotein import into nucleus, translocation  actin binding  plasma membrane  transcription, DNA-templated  actin cytoskeleton  sarcomere  positive regulation of Rho protein signal transduction  positive regulation of transcription from RNA polymerase II promoter  positive regulation of sequence-specific DNA binding transcription factor activity  
NDEx NetworkABRA
Atlas of Cancer Signalling NetworkABRA
Wikipedia pathwaysABRA
Orthology - Evolution
OrthoDB137735
GeneTree (enSembl)ENSG00000174429
Phylogenetic Trees/Animal Genes : TreeFamABRA
HOVERGENQ8N0Z2
HOGENOMQ8N0Z2
Homologs : HomoloGeneABRA
Homology/Alignments : Family Browser (UCSC)ABRA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABRA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABRA
dbVarABRA
ClinVarABRA
1000_GenomesABRA 
Exome Variant ServerABRA
ExAC (Exome Aggregation Consortium)ABRA (select the gene name)
Genetic variants : HAPMAP137735
Genomic Variants (DGV)ABRA [DGVbeta]
DECIPHERABRA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisABRA 
Mutations
ICGC Data PortalABRA 
TCGA Data PortalABRA 
Broad Tumor PortalABRA
OASIS PortalABRA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICABRA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDABRA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ABRA
DgiDB (Drug Gene Interaction Database)ABRA
DoCM (Curated mutations)ABRA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABRA (select a term)
intoGenABRA
Cancer3DABRA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609747   
Orphanet
MedgenABRA
Genetic Testing Registry ABRA
NextProtQ8N0Z2 [Medical]
TSGene137735
GENETestsABRA
Huge Navigator ABRA [HugePedia]
snp3D : Map Gene to Disease137735
BioCentury BCIQABRA
ClinGenABRA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD137735
Chemical/Pharm GKB GenePA143485290
Clinical trialABRA
Miscellaneous
canSAR (ICR)ABRA (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABRA
EVEXABRA
GoPubMedABRA
iHOPABRA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:04:39 CEST 2017

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