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ABRACL (ABRA C-terminal like)

Identity

Alias_namesC6orf115
chromosome 6 open reading frame 115
Alias_symbol (synonym)PRO2013
HSPC280
Costars
Other alias
HGNC (Hugo) ABRACL
LocusID (NCBI) 58527
Atlas_Id 60065
Location 6q24.1  [Link to chromosome band 6q24]
Location_base_pair Starts at 139028682 and ends at 139043302 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ABRACL   21230
Cards
Entrez_Gene (NCBI)ABRACL  58527  ABRA C-terminal like
AliasesC6orf115; Costars; HSPC280; PRO2013
GeneCards (Weizmann)ABRACL
Ensembl hg19 (Hinxton)ENSG00000146386 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146386 [Gene_View]  ENSG00000146386 [Sequence]  chr6:139028682-139043302 [Contig_View]  ABRACL [Vega]
ICGC DataPortalENSG00000146386
TCGA cBioPortalABRACL
AceView (NCBI)ABRACL
Genatlas (Paris)ABRACL
WikiGenes58527
SOURCE (Princeton)ABRACL
Genetics Home Reference (NIH)ABRACL
Genomic and cartography
GoldenPath hg38 (UCSC)ABRACL  -     chr6:139028682-139043302 +  6q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABRACL  -     6q24.1   [Description]    (hg19-Feb_2009)
EnsemblABRACL - 6q24.1 [CytoView hg19]  ABRACL - 6q24.1 [CytoView hg38]
Mapping of homologs : NCBIABRACL [Mapview hg19]  ABRACL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF116682 AF161398 AK309402 BC014953 BG563686
RefSeq transcript (Entrez)NM_021243
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ABRACL
Cluster EST : UnigeneHs.600861 [ NCBI ]
CGAP (NCI)Hs.600861
Alternative Splicing GalleryENSG00000146386
Gene ExpressionABRACL [ NCBI-GEO ]   ABRACL [ EBI - ARRAY_EXPRESS ]   ABRACL [ SEEK ]   ABRACL [ MEM ]
Gene Expression Viewer (FireBrowse)ABRACL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58527
GTEX Portal (Tissue expression)ABRACL
Human Protein AtlasENSG00000146386-ABRACL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P1F3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P1F3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P1F3
Splice isoforms : SwissVarQ9P1F3
PhosPhoSitePlusQ9P1F3
Domains : Interpro (EBI)Costars_dom   
Domain families : Pfam (Sanger)Costars (PF14705)   
Domain families : Pfam (NCBI)pfam14705   
Domain families : Smart (EMBL)Costars (SM01283)  
Conserved Domain (NCBI)ABRACL
DMDM Disease mutations58527
Blocks (Seattle)ABRACL
PDB (SRS)2L2O   
PDB (PDBSum)2L2O   
PDB (IMB)2L2O   
PDB (RSDB)2L2O   
Structural Biology KnowledgeBase2L2O   
SCOP (Structural Classification of Proteins)2L2O   
CATH (Classification of proteins structures)2L2O   
SuperfamilyQ9P1F3
Human Protein Atlas [tissue]ENSG00000146386-ABRACL [tissue]
Peptide AtlasQ9P1F3
IPIIPI00855846   IPI00514113   
Protein Interaction databases
DIP (DOE-UCLA)Q9P1F3
IntAct (EBI)Q9P1F3
FunCoupENSG00000146386
BioGRIDABRACL
STRING (EMBL)ABRACL
ZODIACABRACL
Ontologies - Pathways
QuickGOQ9P1F3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkABRACL
Atlas of Cancer Signalling NetworkABRACL
Wikipedia pathwaysABRACL
Orthology - Evolution
OrthoDB58527
GeneTree (enSembl)ENSG00000146386
Phylogenetic Trees/Animal Genes : TreeFamABRACL
HOVERGENQ9P1F3
HOGENOMQ9P1F3
Homologs : HomoloGeneABRACL
Homology/Alignments : Family Browser (UCSC)ABRACL
Gene fusions - Rearrangements
Fusion : QuiverABRACL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABRACL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABRACL
dbVarABRACL
ClinVarABRACL
1000_GenomesABRACL 
Exome Variant ServerABRACL
ExAC (Exome Aggregation Consortium)ENSG00000146386
GNOMAD BrowserENSG00000146386
Varsome BrowserABRACL
Genetic variants : HAPMAP58527
Genomic Variants (DGV)ABRACL [DGVbeta]
DECIPHERABRACL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisABRACL 
Mutations
ICGC Data PortalABRACL 
TCGA Data PortalABRACL 
Broad Tumor PortalABRACL
OASIS PortalABRACL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICABRACL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDABRACL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ABRACL
DgiDB (Drug Gene Interaction Database)ABRACL
DoCM (Curated mutations)ABRACL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABRACL (select a term)
intoGenABRACL
Cancer3DABRACL(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETABRACL
MedgenABRACL
Genetic Testing Registry ABRACL
NextProtQ9P1F3 [Medical]
TSGene58527
GENETestsABRACL
Target ValidationABRACL
Huge Navigator ABRACL [HugePedia]
snp3D : Map Gene to Disease58527
BioCentury BCIQABRACL
ClinGenABRACL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58527
Chemical/Pharm GKB GenePA134884626
Clinical trialABRACL
Miscellaneous
canSAR (ICR)ABRACL (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABRACL
EVEXABRACL
GoPubMedABRACL
iHOPABRACL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:34:25 CEST 2018

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