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ABRAXAS2 (abraxas 2, BRISC complex subunit)

Identity

Other aliasABRO1
FAM175B
KIAA0157
HGNC (Hugo) ABRAXAS2
LocusID (NCBI) 23172
Atlas_Id 56904
Location 10q26.13  [Link to chromosome band 10q26]
Location_base_pair Starts at 124801785 and ends at 124836670 bp from pter ( according to hg38-Dec_2013)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)ABRAXAS2   28975
Cards
Entrez_Gene (NCBI)ABRAXAS2  23172  abraxas 2, BRISC complex subunit
AliasesABRO1; FAM175B; KIAA0157
GeneCards (Weizmann)ABRAXAS2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:124801785-124836670 [Contig_View]  ABRAXAS2 [Vega]
TCGA cBioPortalABRAXAS2
AceView (NCBI)ABRAXAS2
Genatlas (Paris)ABRAXAS2
WikiGenes23172
SOURCE (Princeton)ABRAXAS2
Genetics Home Reference (NIH)ABRAXAS2
Genomic and cartography
GoldenPath hg38 (UCSC)ABRAXAS2  -     chr10:124801785-124836670 +  10q26.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABRAXAS2  -     10q26.13   [Description]    (hg19-Feb_2009)
EnsemblABRAXAS2 - 10q26.13 [CytoView hg19]  ABRAXAS2 - 10q26.13 [CytoView hg38]
Mapping of homologs : NCBIABRAXAS2 [Mapview hg19]  ABRAXAS2 [Mapview hg38]
OMIM611144   
Gene and transcription
Genbank (Entrez)AK025991 AK296677 AL537809 BC008999 BQ000004
RefSeq transcript (Entrez)NM_032182
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ABRAXAS2
Cluster EST : UnigeneHs.280695 [ NCBI ]
CGAP (NCI)Hs.280695
Gene ExpressionABRAXAS2 [ NCBI-GEO ]   ABRAXAS2 [ EBI - ARRAY_EXPRESS ]   ABRAXAS2 [ SEEK ]   ABRAXAS2 [ MEM ]
Gene Expression Viewer (FireBrowse)ABRAXAS2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23172
GTEX Portal (Tissue expression)ABRAXAS2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15018   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15018  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15018
Splice isoforms : SwissVarQ15018
PhosPhoSitePlusQ15018
Domains : Interpro (EBI)FAM175    FAM175_BRISC_cplx_Abro1_su   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ABRAXAS2
DMDM Disease mutations23172
Blocks (Seattle)ABRAXAS2
SuperfamilyQ15018
Peptide AtlasQ15018
IPIIPI00299517   
Protein Interaction databases
DIP (DOE-UCLA)Q15018
IntAct (EBI)Q15018
BioGRIDABRAXAS2
STRING (EMBL)ABRAXAS2
ZODIACABRAXAS2
Ontologies - Pathways
QuickGOQ15018
Ontology : AmiGOmitotic cell cycle  response to ischemia  cytoplasm  centrosome  cytosol  chromosome segregation  microtubule binding  attachment of spindle microtubules to kinetochore  protein deubiquitination  midbody  polyubiquitin binding  spindle pole centrosome  microtubule minus-end  cell division  protein K63-linked deubiquitination  BRISC complex  mitotic spindle assembly  
Ontology : EGO-EBImitotic cell cycle  response to ischemia  cytoplasm  centrosome  cytosol  chromosome segregation  microtubule binding  attachment of spindle microtubules to kinetochore  protein deubiquitination  midbody  polyubiquitin binding  spindle pole centrosome  microtubule minus-end  cell division  protein K63-linked deubiquitination  BRISC complex  mitotic spindle assembly  
NDEx NetworkABRAXAS2
Atlas of Cancer Signalling NetworkABRAXAS2
Wikipedia pathwaysABRAXAS2
Orthology - Evolution
OrthoDB23172
Phylogenetic Trees/Animal Genes : TreeFamABRAXAS2
HOVERGENQ15018
HOGENOMQ15018
Homologs : HomoloGeneABRAXAS2
Homology/Alignments : Family Browser (UCSC)ABRAXAS2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABRAXAS2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABRAXAS2
dbVarABRAXAS2
ClinVarABRAXAS2
1000_GenomesABRAXAS2 
Exome Variant ServerABRAXAS2
ExAC (Exome Aggregation Consortium)ABRAXAS2 (select the gene name)
Genetic variants : HAPMAP23172
Genomic Variants (DGV)ABRAXAS2 [DGVbeta]
DECIPHERABRAXAS2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisABRAXAS2 
Mutations
ICGC Data PortalABRAXAS2 
TCGA Data PortalABRAXAS2 
Broad Tumor PortalABRAXAS2
OASIS PortalABRAXAS2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDABRAXAS2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ABRAXAS2
DgiDB (Drug Gene Interaction Database)ABRAXAS2
DoCM (Curated mutations)ABRAXAS2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABRAXAS2 (select a term)
intoGenABRAXAS2
Cancer3DABRAXAS2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611144   
Orphanet
MedgenABRAXAS2
Genetic Testing Registry ABRAXAS2
NextProtQ15018 [Medical]
TSGene23172
GENETestsABRAXAS2
Target ValidationABRAXAS2
Huge Navigator ABRAXAS2 [HugePedia]
snp3D : Map Gene to Disease23172
BioCentury BCIQABRAXAS2
ClinGenABRAXAS2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23172
Chemical/Pharm GKB GenePA162387331
Clinical trialABRAXAS2
Miscellaneous
canSAR (ICR)ABRAXAS2 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABRAXAS2
EVEXABRAXAS2
GoPubMedABRAXAS2
iHOPABRAXAS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 18:55:49 CEST 2017

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