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ABT1 (activator of basal transcription 1)

Identity

Other aliashABT1
HGNC (Hugo) ABT1
LocusID (NCBI) 29777
Atlas_Id 60066
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 26596943 and ends at 26600049 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACTR3 (2q14.1) / ABT1 (6p22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ABT1   17369
Cards
Entrez_Gene (NCBI)ABT1  29777  activator of basal transcription 1
AliaseshABT1
GeneCards (Weizmann)ABT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr6:26596943-26600049 [Contig_View]  ABT1 [Vega]
TCGA cBioPortalABT1
AceView (NCBI)ABT1
Genatlas (Paris)ABT1
WikiGenes29777
SOURCE (Princeton)ABT1
Genetics Home Reference (NIH)ABT1
Genomic and cartography
GoldenPath hg38 (UCSC)ABT1  -     chr6:26596943-26600049 +  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ABT1  -     6p22.2   [Description]    (hg19-Feb_2009)
EnsemblABT1 - 6p22.2 [CytoView hg19]  ABT1 - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBIABT1 [Mapview hg19]  ABT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB027258 BC048812 BC066313 EU446795
RefSeq transcript (Entrez)NM_013375
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ABT1
Cluster EST : UnigeneHs.254406 [ NCBI ]
CGAP (NCI)Hs.254406
Gene ExpressionABT1 [ NCBI-GEO ]   ABT1 [ EBI - ARRAY_EXPRESS ]   ABT1 [ SEEK ]   ABT1 [ MEM ]
Gene Expression Viewer (FireBrowse)ABT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29777
GTEX Portal (Tissue expression)ABT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULW3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULW3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULW3
Splice isoforms : SwissVarQ9ULW3
PhosPhoSitePlusQ9ULW3
Domains : Interpro (EBI)ABT1/ESF2_RRM    Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ABT1
DMDM Disease mutations29777
Blocks (Seattle)ABT1
SuperfamilyQ9ULW3
Peptide AtlasQ9ULW3
HPRD16469
IPIIPI00002938   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULW3
IntAct (EBI)Q9ULW3
BioGRIDABT1
STRING (EMBL)ABT1
ZODIACABT1
Ontologies - Pathways
QuickGOQ9ULW3
Ontology : AmiGOendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  DNA binding  transcription coactivator activity  RNA binding  RNA binding  protein binding  nucleus  transcription factor complex  nucleolus  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  spinal cord motor neuron differentiation  small-subunit processome assembly  
Ontology : EGO-EBIendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  DNA binding  transcription coactivator activity  RNA binding  RNA binding  protein binding  nucleus  transcription factor complex  nucleolus  regulation of transcription from RNA polymerase II promoter  transcription from RNA polymerase II promoter  spinal cord motor neuron differentiation  small-subunit processome assembly  
NDEx NetworkABT1
Atlas of Cancer Signalling NetworkABT1
Wikipedia pathwaysABT1
Orthology - Evolution
OrthoDB29777
Phylogenetic Trees/Animal Genes : TreeFamABT1
HOVERGENQ9ULW3
HOGENOMQ9ULW3
Homologs : HomoloGeneABT1
Homology/Alignments : Family Browser (UCSC)ABT1
Gene fusions - Rearrangements
Fusion: Tumor Portal ABT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABT1
dbVarABT1
ClinVarABT1
1000_GenomesABT1 
Exome Variant ServerABT1
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP29777
Genomic Variants (DGV)ABT1 [DGVbeta]
DECIPHERABT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisABT1 
Mutations
ICGC Data PortalABT1 
TCGA Data PortalABT1 
Broad Tumor PortalABT1
OASIS PortalABT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICABT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDABT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ABT1
DgiDB (Drug Gene Interaction Database)ABT1
DoCM (Curated mutations)ABT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABT1 (select a term)
intoGenABT1
Cancer3DABT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenABT1
Genetic Testing Registry ABT1
NextProtQ9ULW3 [Medical]
TSGene29777
GENETestsABT1
Target ValidationABT1
Huge Navigator ABT1 [HugePedia]
snp3D : Map Gene to Disease29777
BioCentury BCIQABT1
ClinGenABT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29777
Chemical/Pharm GKB GenePA38451
Clinical trialABT1
Miscellaneous
canSAR (ICR)ABT1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABT1
EVEXABT1
GoPubMedABT1
iHOPABT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:36:49 CET 2017

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