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ABTB2 (ankyrin repeat and BTB (POZ) domain containing 2)

Identity

Alias_namesankyrin repeat and BTB (POZ) domain containing 2
Alias_symbol (synonym)DKFZP586C1619
BTBD22
ABTB2A
Other alias
HGNC (Hugo) ABTB2
LocusID (NCBI) 25841
Atlas_Id 60067
Location 11p13  [Link to chromosome band 11p13]
Location_base_pair Starts at 34172534 and ends at 34379555 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ABTB2 (11p13) / APIP (11p13)ABTB2 (11p13) / ATXN3 (14q32.12)ABTB2 (11p13) / CIR1 (2q31.1)
ABTB2 (11p13) / QRICH1 (3p21.31)ABTB2 ATXN3ABTB2 APIP

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ABTB2   23842
Cards
Entrez_Gene (NCBI)ABTB2  25841  ankyrin repeat and BTB (POZ) domain containing 2
AliasesABTB2A; BTBD22
GeneCards (Weizmann)ABTB2
Ensembl hg19 (Hinxton)ENSG00000166016 [Gene_View]  chr11:34172534-34379555 [Contig_View]  ABTB2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000166016 [Gene_View]  chr11:34172534-34379555 [Contig_View]  ABTB2 [Vega]
ICGC DataPortalENSG00000166016
TCGA cBioPortalABTB2
AceView (NCBI)ABTB2
Genatlas (Paris)ABTB2
WikiGenes25841
SOURCE (Princeton)ABTB2
Genetics Home Reference (NIH)ABTB2
Genomic and cartography
GoldenPath hg19 (UCSC)ABTB2  -     chr11:34172534-34379555 -  11p13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ABTB2  -     11p13   [Description]    (hg38-Dec_2013)
EnsemblABTB2 - 11p13 [CytoView hg19]  ABTB2 - 11p13 [CytoView hg38]
Mapping of homologs : NCBIABTB2 [Mapview hg19]  ABTB2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056863 AK091560 AK095632 AK291744 AL050374
RefSeq transcript (Entrez)NM_145804
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)ABTB2
Cluster EST : UnigeneHs.23361 [ NCBI ]
CGAP (NCI)Hs.23361
Alternative Splicing GalleryENSG00000166016
Gene ExpressionABTB2 [ NCBI-GEO ]   ABTB2 [ EBI - ARRAY_EXPRESS ]   ABTB2 [ SEEK ]   ABTB2 [ MEM ]
Gene Expression Viewer (FireBrowse)ABTB2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25841
GTEX Portal (Tissue expression)ABTB2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N961   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N961  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N961
Splice isoforms : SwissVarQ8N961
PhosPhoSitePlusQ8N961
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    BTB (PS50097)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    BTB/POZ-like    BTB/POZ_fold    BTB_POZ    Histone-fold   
Domain families : Pfam (Sanger)Ank (PF00023)    Ank_2 (PF12796)    BTB (PF00651)   
Domain families : Pfam (NCBI)pfam00023    pfam12796    pfam00651   
Domain families : Smart (EMBL)ANK (SM00248)  BTB (SM00225)  
Conserved Domain (NCBI)ABTB2
DMDM Disease mutations25841
Blocks (Seattle)ABTB2
SuperfamilyQ8N961
Human Protein AtlasENSG00000166016
Peptide AtlasQ8N961
HPRD10624
IPIIPI00974022   
Protein Interaction databases
DIP (DOE-UCLA)Q8N961
IntAct (EBI)Q8N961
FunCoupENSG00000166016
BioGRIDABTB2
STRING (EMBL)ABTB2
ZODIACABTB2
Ontologies - Pathways
QuickGOQ8N961
Ontology : AmiGOmolecular_function  cellular_component  nucleus  nucleoplasm  protein heterodimerization activity  cellular response to toxic substance  
Ontology : EGO-EBImolecular_function  cellular_component  nucleus  nucleoplasm  protein heterodimerization activity  cellular response to toxic substance  
NDEx NetworkABTB2
Atlas of Cancer Signalling NetworkABTB2
Wikipedia pathwaysABTB2
Orthology - Evolution
OrthoDB25841
GeneTree (enSembl)ENSG00000166016
Phylogenetic Trees/Animal Genes : TreeFamABTB2
HOVERGENQ8N961
HOGENOMQ8N961
Homologs : HomoloGeneABTB2
Homology/Alignments : Family Browser (UCSC)ABTB2
Gene fusions - Rearrangements
Fusion: TCGAABTB2 ATXN3
Fusion: TCGAABTB2 APIP
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerABTB2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ABTB2
dbVarABTB2
ClinVarABTB2
1000_GenomesABTB2 
Exome Variant ServerABTB2
ExAC (Exome Aggregation Consortium)ABTB2 (select the gene name)
Genetic variants : HAPMAP25841
Genomic Variants (DGV)ABTB2 [DGVbeta]
DECIPHER (Syndromes)11:34172534-34379555  ENSG00000166016
CONAN: Copy Number AnalysisABTB2 
Mutations
ICGC Data PortalABTB2 
TCGA Data PortalABTB2 
Broad Tumor PortalABTB2
OASIS PortalABTB2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICABTB2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDABTB2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ABTB2
DgiDB (Drug Gene Interaction Database)ABTB2
DoCM (Curated mutations)ABTB2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ABTB2 (select a term)
intoGenABTB2
Cancer3DABTB2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenABTB2
Genetic Testing Registry ABTB2
NextProtQ8N961 [Medical]
TSGene25841
GENETestsABTB2
Huge Navigator ABTB2 [HugePedia]
snp3D : Map Gene to Disease25841
BioCentury BCIQABTB2
ClinGenABTB2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25841
Chemical/Pharm GKB GenePA134937734
Clinical trialABTB2
Miscellaneous
canSAR (ICR)ABTB2 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineABTB2
EVEXABTB2
GoPubMedABTB2
iHOPABTB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:53:26 CET 2017

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