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ACAD11 (acyl-CoA dehydrogenase family member 11)

Identity

Alias_namesacyl-Coenzyme A dehydrogenase family, member 11
acyl-CoA dehydrogenase family, member 11
Alias_symbol (synonym)FLJ12592
Other aliasACAD-11
HGNC (Hugo) ACAD11
LocusID (NCBI) 84129
Atlas_Id 54100
Location 3q22.1  [Link to chromosome band 3q22]
Location_base_pair Starts at 132276982 and ends at 132378975 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ACAD11 (3q22.1) / CBFA2T2 (20q11.21)ACAD11 (3q22.1) / TRAPPC13 (5q12.3)CPNE4 (3q22.1) / ACAD11 (3q22.1)
LRRC40 (1p31.1) / ACAD11 (3q22.1)NPHP3 (3q22.1) / ACAD11 (3q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACAD11   30211
Cards
Entrez_Gene (NCBI)ACAD11  84129  acyl-CoA dehydrogenase family member 11
AliasesACAD-11
GeneCards (Weizmann)ACAD11
Ensembl hg19 (Hinxton)ENSG00000240303 [Gene_View]  chr3:132276982-132378975 [Contig_View]  ACAD11 [Vega]
Ensembl hg38 (Hinxton)ENSG00000240303 [Gene_View]  chr3:132276982-132378975 [Contig_View]  ACAD11 [Vega]
ICGC DataPortalENSG00000240303
TCGA cBioPortalACAD11
AceView (NCBI)ACAD11
Genatlas (Paris)ACAD11
WikiGenes84129
SOURCE (Princeton)ACAD11
Genetics Home Reference (NIH)ACAD11
Genomic and cartography
GoldenPath hg19 (UCSC)ACAD11  -     chr3:132276982-132378975 -  3q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ACAD11  -     3q22.1   [Description]    (hg38-Dec_2013)
EnsemblACAD11 - 3q22.1 [CytoView hg19]  ACAD11 - 3q22.1 [CytoView hg38]
Mapping of homologs : NCBIACAD11 [Mapview hg19]  ACAD11 [Mapview hg38]
OMIM614288   
Gene and transcription
Genbank (Entrez)AI091999 AJ608287 AK022654 AK131265 AK298627
RefSeq transcript (Entrez)NM_032169
RefSeq genomic (Entrez)NC_000003 NC_018914 NG_042830 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)ACAD11
Cluster EST : UnigeneHs.441378 [ NCBI ]
CGAP (NCI)Hs.441378
Alternative Splicing GalleryENSG00000240303
Gene ExpressionACAD11 [ NCBI-GEO ]   ACAD11 [ EBI - ARRAY_EXPRESS ]   ACAD11 [ SEEK ]   ACAD11 [ MEM ]
Gene Expression Viewer (FireBrowse)ACAD11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84129
GTEX Portal (Tissue expression)ACAD11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ709F0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ709F0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ709F0
Splice isoforms : SwissVarQ709F0
PhosPhoSitePlusQ709F0
Domains : Interpro (EBI)Acyl-CoA_Oxase/DH_cen-dom    AcylCo_DH/oxidase_C    AcylCoA_DH/ox_N    AcylCoA_DH/oxidase_NM_dom    Aminoglycoside_PTrfase    Kinase-like_dom   
Domain families : Pfam (Sanger)Acyl-CoA_dh_1 (PF00441)    Acyl-CoA_dh_M (PF02770)    Acyl-CoA_dh_N (PF02771)    APH (PF01636)   
Domain families : Pfam (NCBI)pfam00441    pfam02770    pfam02771    pfam01636   
Conserved Domain (NCBI)ACAD11
DMDM Disease mutations84129
Blocks (Seattle)ACAD11
PDB (SRS)2WBI   
PDB (PDBSum)2WBI   
PDB (IMB)2WBI   
PDB (RSDB)2WBI   
Structural Biology KnowledgeBase2WBI   
SCOP (Structural Classification of Proteins)2WBI   
CATH (Classification of proteins structures)2WBI   
SuperfamilyQ709F0
Human Protein AtlasENSG00000240303
Peptide AtlasQ709F0
HPRD13352
IPIIPI00420065   IPI00795974   IPI00796584   IPI01015678   IPI00945409   IPI00966515   
Protein Interaction databases
DIP (DOE-UCLA)Q709F0
IntAct (EBI)Q709F0
FunCoupENSG00000240303
BioGRIDACAD11
STRING (EMBL)ACAD11
ZODIACACAD11
Ontologies - Pathways
QuickGOQ709F0
Ontology : AmiGOfatty-acyl-CoA binding  acyl-CoA dehydrogenase activity  long-chain-acyl-CoA dehydrogenase activity  nucleus  mitochondrial inner membrane  peroxisome  fatty acid beta-oxidation  electron carrier activity  very-long-chain-acyl-CoA dehydrogenase activity  mitochondrial membrane  fatty acid beta-oxidation using acyl-CoA dehydrogenase  flavin adenine dinucleotide binding  oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor  lipid homeostasis  medium-chain-acyl-CoA dehydrogenase activity  
Ontology : EGO-EBIfatty-acyl-CoA binding  acyl-CoA dehydrogenase activity  long-chain-acyl-CoA dehydrogenase activity  nucleus  mitochondrial inner membrane  peroxisome  fatty acid beta-oxidation  electron carrier activity  very-long-chain-acyl-CoA dehydrogenase activity  mitochondrial membrane  fatty acid beta-oxidation using acyl-CoA dehydrogenase  flavin adenine dinucleotide binding  oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor  lipid homeostasis  medium-chain-acyl-CoA dehydrogenase activity  
NDEx NetworkACAD11
Atlas of Cancer Signalling NetworkACAD11
Wikipedia pathwaysACAD11
Orthology - Evolution
OrthoDB84129
GeneTree (enSembl)ENSG00000240303
Phylogenetic Trees/Animal Genes : TreeFamACAD11
HOVERGENQ709F0
HOGENOMQ709F0
Homologs : HomoloGeneACAD11
Homology/Alignments : Family Browser (UCSC)ACAD11
Gene fusions - Rearrangements
Fusion : MitelmanACAD11/TRAPPC13 [3q22.1/5q12.3]  
Fusion : MitelmanCPNE4/ACAD11 [3q22.1/3q22.1]  [t(3;3)(q22;q22)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACAD11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACAD11
dbVarACAD11
ClinVarACAD11
1000_GenomesACAD11 
Exome Variant ServerACAD11
ExAC (Exome Aggregation Consortium)ACAD11 (select the gene name)
Genetic variants : HAPMAP84129
Genomic Variants (DGV)ACAD11 [DGVbeta]
DECIPHER (Syndromes)3:132276982-132378975  ENSG00000240303
CONAN: Copy Number AnalysisACAD11 
Mutations
ICGC Data PortalACAD11 
TCGA Data PortalACAD11 
Broad Tumor PortalACAD11
OASIS PortalACAD11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACAD11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACAD11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ACAD11
DgiDB (Drug Gene Interaction Database)ACAD11
DoCM (Curated mutations)ACAD11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACAD11 (select a term)
intoGenACAD11
Cancer3DACAD11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614288   
Orphanet
MedgenACAD11
Genetic Testing Registry ACAD11
NextProtQ709F0 [Medical]
TSGene84129
GENETestsACAD11
Huge Navigator ACAD11 [HugePedia]
snp3D : Map Gene to Disease84129
BioCentury BCIQACAD11
ClinGenACAD11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84129
Chemical/Pharm GKB GenePA142672658
Clinical trialACAD11
Miscellaneous
canSAR (ICR)ACAD11 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACAD11
EVEXACAD11
GoPubMedACAD11
iHOPACAD11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:51:17 CEST 2017

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