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ACAD9 (acyl-CoA dehydrogenase family member 9)

Identity

Alias_namesacyl-Coenzyme A dehydrogenase family, member 9
acyl-CoA dehydrogenase family, member 9
Alias_symbol (synonym)NPD002
MGC14452
Other alias
HGNC (Hugo) ACAD9
LocusID (NCBI) 28976
Atlas_Id 60071
Location 3q21.3  [Link to chromosome band 3q21]
Location_base_pair Starts at 128879490 and ends at 128913114 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACAD9 (3q21.3) / KIAA1257 (3q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACAD9   21497
Cards
Entrez_Gene (NCBI)ACAD9  28976  acyl-CoA dehydrogenase family member 9
AliasesNPD002
GeneCards (Weizmann)ACAD9
Ensembl hg19 (Hinxton)ENSG00000177646 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177646 [Gene_View]  chr3:128879490-128913114 [Contig_View]  ACAD9 [Vega]
ICGC DataPortalENSG00000177646
TCGA cBioPortalACAD9
AceView (NCBI)ACAD9
Genatlas (Paris)ACAD9
WikiGenes28976
SOURCE (Princeton)ACAD9
Genetics Home Reference (NIH)ACAD9
Genomic and cartography
GoldenPath hg38 (UCSC)ACAD9  -     chr3:128879490-128913114 +  3q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACAD9  -     3q21.3   [Description]    (hg19-Feb_2009)
EnsemblACAD9 - 3q21.3 [CytoView hg19]  ACAD9 - 3q21.3 [CytoView hg38]
Mapping of homologs : NCBIACAD9 [Mapview hg19]  ACAD9 [Mapview hg38]
OMIM611103   611126   
Gene and transcription
Genbank (Entrez)AB209427 AF078854 AF327351 AK022568 AK024012
RefSeq transcript (Entrez)NM_014049
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACAD9
Cluster EST : UnigeneHs.734399 [ NCBI ]
CGAP (NCI)Hs.734399
Alternative Splicing GalleryENSG00000177646
Gene ExpressionACAD9 [ NCBI-GEO ]   ACAD9 [ EBI - ARRAY_EXPRESS ]   ACAD9 [ SEEK ]   ACAD9 [ MEM ]
Gene Expression Viewer (FireBrowse)ACAD9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28976
GTEX Portal (Tissue expression)ACAD9
Human Protein AtlasENSG00000177646-ACAD9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H845   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H845  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H845
Splice isoforms : SwissVarQ9H845
Catalytic activity : Enzyme1.3.99.- [ Enzyme-Expasy ]   1.3.99.-1.3.99.- [ IntEnz-EBI ]   1.3.99.- [ BRENDA ]   1.3.99.- [ KEGG ]   
PhosPhoSitePlusQ9H845
Domaine pattern : Prosite (Expaxy)ACYL_COA_DH_1 (PS00072)    ACYL_COA_DH_2 (PS00073)   
Domains : Interpro (EBI)Acyl-CoA_DH_CS    Acyl-CoA_Oxase/DH_cen-dom    AcylCo_DH/oxidase_C    AcylCoA_DH/ox_N    AcylCoA_DH/oxidase_NM_dom   
Domain families : Pfam (Sanger)Acyl-CoA_dh_1 (PF00441)    Acyl-CoA_dh_M (PF02770)    Acyl-CoA_dh_N (PF02771)   
Domain families : Pfam (NCBI)pfam00441    pfam02770    pfam02771   
Conserved Domain (NCBI)ACAD9
DMDM Disease mutations28976
Blocks (Seattle)ACAD9
SuperfamilyQ9H845
Human Protein Atlas [tissue]ENSG00000177646-ACAD9 [tissue]
Peptide AtlasQ9H845
HPRD12412
IPIIPI00152981   IPI00910925   IPI00790834   IPI00022319   IPI00967628   IPI00963826   IPI00965836   IPI00966286   IPI00965455   
Protein Interaction databases
DIP (DOE-UCLA)Q9H845
IntAct (EBI)Q9H845
FunCoupENSG00000177646
BioGRIDACAD9
STRING (EMBL)ACAD9
ZODIACACAD9
Ontologies - Pathways
QuickGOQ9H845
Ontology : AmiGOacyl-CoA dehydrogenase activity  protein binding  nucleus  mitochondrion  mitochondrial inner membrane  dendrite  mitochondrial respiratory chain complex I assembly  mitochondrial respiratory chain complex I assembly  flavin adenine dinucleotide binding  oxidation-reduction process  
Ontology : EGO-EBIacyl-CoA dehydrogenase activity  protein binding  nucleus  mitochondrion  mitochondrial inner membrane  dendrite  mitochondrial respiratory chain complex I assembly  mitochondrial respiratory chain complex I assembly  flavin adenine dinucleotide binding  oxidation-reduction process  
NDEx NetworkACAD9
Atlas of Cancer Signalling NetworkACAD9
Wikipedia pathwaysACAD9
Orthology - Evolution
OrthoDB28976
GeneTree (enSembl)ENSG00000177646
Phylogenetic Trees/Animal Genes : TreeFamACAD9
HOVERGENQ9H845
HOGENOMQ9H845
Homologs : HomoloGeneACAD9
Homology/Alignments : Family Browser (UCSC)ACAD9
Gene fusions - Rearrangements
Tumor Fusion PortalACAD9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACAD9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACAD9
dbVarACAD9
ClinVarACAD9
1000_GenomesACAD9 
Exome Variant ServerACAD9
ExAC (Exome Aggregation Consortium)ENSG00000177646
GNOMAD BrowserENSG00000177646
Genetic variants : HAPMAP28976
Genomic Variants (DGV)ACAD9 [DGVbeta]
DECIPHERACAD9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACAD9 
Mutations
ICGC Data PortalACAD9 
TCGA Data PortalACAD9 
Broad Tumor PortalACAD9
OASIS PortalACAD9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACAD9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACAD9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ACAD9
DgiDB (Drug Gene Interaction Database)ACAD9
DoCM (Curated mutations)ACAD9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACAD9 (select a term)
intoGenACAD9
Cancer3DACAD9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611103    611126   
Orphanet14474   
DisGeNETACAD9
MedgenACAD9
Genetic Testing Registry ACAD9
NextProtQ9H845 [Medical]
TSGene28976
GENETestsACAD9
Target ValidationACAD9
Huge Navigator ACAD9 [HugePedia]
snp3D : Map Gene to Disease28976
BioCentury BCIQACAD9
ClinGenACAD9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28976
Chemical/Pharm GKB GenePA134900655
Clinical trialACAD9
Miscellaneous
canSAR (ICR)ACAD9 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACAD9
EVEXACAD9
GoPubMedACAD9
iHOPACAD9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:06:55 CET 2017

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