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ACADS (acyl-CoA dehydrogenase short chain)

Identity

Alias_namesacyl-Coenzyme A dehydrogenase, C-2 to C-3 short chain
Alias_symbol (synonym)SCAD
ACAD3
Other alias
HGNC (Hugo) ACADS
LocusID (NCBI) 35
Atlas_Id 60074
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 120725738 and ends at 120740008 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACADS (12q24.31) / ABCC3 (17q21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ACADS   90
Cards
Entrez_Gene (NCBI)ACADS  35  acyl-CoA dehydrogenase short chain
AliasesACAD3; SCAD
GeneCards (Weizmann)ACADS
Ensembl hg19 (Hinxton)ENSG00000122971 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122971 [Gene_View]  ENSG00000122971 [Sequence]  chr12:120725738-120740008 [Contig_View]  ACADS [Vega]
ICGC DataPortalENSG00000122971
TCGA cBioPortalACADS
AceView (NCBI)ACADS
Genatlas (Paris)ACADS
WikiGenes35
SOURCE (Princeton)ACADS
Genetics Home Reference (NIH)ACADS
Genomic and cartography
GoldenPath hg38 (UCSC)ACADS  -     chr12:120725738-120740008 +  12q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACADS  -     12q24.31   [Description]    (hg19-Feb_2009)
GoldenPathACADS - 12q24.31 [CytoView hg19]  ACADS - 12q24.31 [CytoView hg38]
ImmunoBaseENSG00000122971
Mapping of homologs : NCBIACADS [Mapview hg19]  ACADS [Mapview hg38]
OMIM201470   606885   
Gene and transcription
Genbank (Entrez)AB527081 AK300645 BC025963 BU682624 DB487184
RefSeq transcript (Entrez)NM_000017 NM_001302554
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACADS
Cluster EST : UnigeneHs.507076 [ NCBI ]
CGAP (NCI)Hs.507076
Alternative Splicing GalleryENSG00000122971
Gene ExpressionACADS [ NCBI-GEO ]   ACADS [ EBI - ARRAY_EXPRESS ]   ACADS [ SEEK ]   ACADS [ MEM ]
Gene Expression Viewer (FireBrowse)ACADS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)35
GTEX Portal (Tissue expression)ACADS
Human Protein AtlasENSG00000122971-ACADS [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP16219   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP16219  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP16219
Splice isoforms : SwissVarP16219
Catalytic activity : Enzyme1.3.8.1 [ Enzyme-Expasy ]   1.3.8.11.3.8.1 [ IntEnz-EBI ]   1.3.8.1 [ BRENDA ]   1.3.8.1 [ KEGG ]   
PhosPhoSitePlusP16219
Domaine pattern : Prosite (Expaxy)ACYL_COA_DH_1 (PS00072)    ACYL_COA_DH_2 (PS00073)   
Domains : Interpro (EBI)Acyl-CoA_DH_CS    Acyl-CoA_Oxase/DH_cen-dom    AcylCo_DH-like_C    AcylCo_DH/oxidase_C    AcylCoA_DH/ox_N    AcylCoA_DH/ox_N_sf    AcylCoA_DH/oxidase_NM_dom   
Domain families : Pfam (Sanger)Acyl-CoA_dh_1 (PF00441)    Acyl-CoA_dh_M (PF02770)    Acyl-CoA_dh_N (PF02771)   
Domain families : Pfam (NCBI)pfam00441    pfam02770    pfam02771   
Conserved Domain (NCBI)ACADS
DMDM Disease mutations35
Blocks (Seattle)ACADS
PDB (RSDB)2VIG   
PDB Europe2VIG   
PDB (PDBSum)2VIG   
PDB (IMB)2VIG   
Structural Biology KnowledgeBase2VIG   
SCOP (Structural Classification of Proteins)2VIG   
CATH (Classification of proteins structures)2VIG   
SuperfamilyP16219
Human Protein Atlas [tissue]ENSG00000122971-ACADS [tissue]
Peptide AtlasP16219
HPRD06053
IPIIPI00027701   IPI00909944   
Protein Interaction databases
DIP (DOE-UCLA)P16219
IntAct (EBI)P16219
FunCoupENSG00000122971
BioGRIDACADS
STRING (EMBL)ACADS
ZODIACACADS
Ontologies - Pathways
QuickGOP16219
Ontology : AmiGOacyl-CoA dehydrogenase activity  butyryl-CoA dehydrogenase activity  nucleus  nucleoplasm  mitochondrion  mitochondrion  mitochondrial matrix  fatty acid beta-oxidation  fatty acid beta-oxidation using acyl-CoA dehydrogenase  butyrate catabolic process  flavin adenine dinucleotide binding  
Ontology : EGO-EBIacyl-CoA dehydrogenase activity  butyryl-CoA dehydrogenase activity  nucleus  nucleoplasm  mitochondrion  mitochondrion  mitochondrial matrix  fatty acid beta-oxidation  fatty acid beta-oxidation using acyl-CoA dehydrogenase  butyrate catabolic process  flavin adenine dinucleotide binding  
Pathways : KEGGButanoate metabolism    Valine, leucine and isoleucine degradation    Fatty acid metabolism   
NDEx NetworkACADS
Atlas of Cancer Signalling NetworkACADS
Wikipedia pathwaysACADS
Orthology - Evolution
OrthoDB35
GeneTree (enSembl)ENSG00000122971
Phylogenetic Trees/Animal Genes : TreeFamACADS
HOGENOMP16219
Homologs : HomoloGeneACADS
Homology/Alignments : Family Browser (UCSC)ACADS
Gene fusions - Rearrangements
Fusion : QuiverACADS
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACADS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACADS
dbVarACADS
ClinVarACADS
1000_GenomesACADS 
Exome Variant ServerACADS
ExAC (Exome Aggregation Consortium)ENSG00000122971
GNOMAD BrowserENSG00000122971
Varsome BrowserACADS
Genetic variants : HAPMAP35
Genomic Variants (DGV)ACADS [DGVbeta]
DECIPHERACADS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACADS 
Mutations
ICGC Data PortalACADS 
TCGA Data PortalACADS 
Broad Tumor PortalACADS
OASIS PortalACADS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACADS  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DACADS
Mutations and Diseases : HGMDACADS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ACADS
DgiDB (Drug Gene Interaction Database)ACADS
DoCM (Curated mutations)ACADS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACADS (select a term)
intoGenACADS
Cancer3DACADS(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM201470    606885   
Orphanet8767   
DisGeNETACADS
MedgenACADS
Genetic Testing Registry ACADS
NextProtP16219 [Medical]
TSGene35
GENETestsACADS
Target ValidationACADS
Huge Navigator ACADS [HugePedia]
snp3D : Map Gene to Disease35
BioCentury BCIQACADS
ClinGenACADS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD35
Chemical/Pharm GKB GenePA24426
Clinical trialACADS
Miscellaneous
canSAR (ICR)ACADS (select the gene name)
DataMed IndexACADS
Probes
Litterature
PubMed54 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACADS
EVEXACADS
GoPubMedACADS
iHOPACADS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:18:38 CEST 2019
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