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ACADSB (acyl-CoA dehydrogenase short/branched chain)

Identity

Alias (NCBI)2-MEBCAD
ACAD7
SBCAD
HGNC (Hugo) ACADSB
HGNC Alias symbSBCAD
ACAD7
HGNC Previous nameacyl-Coenzyme A dehydrogenase, short/branched chain
LocusID (NCBI) 36
Atlas_Id 60075
Location 10q26.13  [Link to chromosome band 10q26]
Location_base_pair Starts at 123009006 and ends at 123058290 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CASP6 (4q25) / ACADSB (10q26.13)FAM127A (Xq26.3) / ACADSB (10q26.13)FGFR2 (10q26.13) / ACADSB (10q26.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ACADSB   91
LRG (Locus Reference Genomic)LRG_451
Cards
Entrez_Gene (NCBI)ACADSB    acyl-CoA dehydrogenase short/branched chain
Aliases2-MEBCAD; ACAD7; SBCAD
GeneCards (Weizmann)ACADSB
Ensembl hg19 (Hinxton)ENSG00000196177 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196177 [Gene_View]  ENSG00000196177 [Sequence]  chr10:123009006-123058290 [Contig_View]  ACADSB [Vega]
ICGC DataPortalENSG00000196177
TCGA cBioPortalACADSB
AceView (NCBI)ACADSB
Genatlas (Paris)ACADSB
SOURCE (Princeton)ACADSB
Genetics Home Reference (NIH)ACADSB
Genomic and cartography
GoldenPath hg38 (UCSC)ACADSB  -     chr10:123009006-123058290 +  10q26.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACADSB  -     10q26.13   [Description]    (hg19-Feb_2009)
GoldenPathACADSB - 10q26.13 [CytoView hg19]  ACADSB - 10q26.13 [CytoView hg38]
ImmunoBaseENSG00000196177
Genome Data Viewer NCBIACADSB [Mapview hg19]  
OMIM600301   610006   
Gene and transcription
Genbank (Entrez)AK298638 AK314241 AL831821 AW408417 BC013756
RefSeq transcript (Entrez)NM_001330174 NM_001609
Consensus coding sequences : CCDS (NCBI)ACADSB
Gene ExpressionACADSB [ NCBI-GEO ]   ACADSB [ EBI - ARRAY_EXPRESS ]   ACADSB [ SEEK ]   ACADSB [ MEM ]
Gene Expression Viewer (FireBrowse)ACADSB [ Firebrowse - Broad ]
GenevisibleExpression of ACADSB in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)36
GTEX Portal (Tissue expression)ACADSB
Human Protein AtlasENSG00000196177-ACADSB [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP45954   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP45954  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP45954
PhosPhoSitePlusP45954
Domaine pattern : Prosite (Expaxy)ACYL_COA_DH_1 (PS00072)    ACYL_COA_DH_2 (PS00073)   
Domains : Interpro (EBI)Acyl-CoA_DH_CS    Acyl-CoA_Oxase/DH_cen-dom    AcylCo_DH-like_C    AcylCo_DH/oxidase_C    AcylCoA_DH/ox_N    AcylCoA_DH/ox_N_sf    AcylCoA_DH/oxidase_NM_dom   
Domain families : Pfam (Sanger)Acyl-CoA_dh_1 (PF00441)    Acyl-CoA_dh_M (PF02770)    Acyl-CoA_dh_N (PF02771)   
Domain families : Pfam (NCBI)pfam00441    pfam02770    pfam02771   
Conserved Domain (NCBI)ACADSB
PDB (RSDB)2JIF   
PDB Europe2JIF   
PDB (PDBSum)2JIF   
PDB (IMB)2JIF   
Structural Biology KnowledgeBase2JIF   
SCOP (Structural Classification of Proteins)2JIF   
CATH (Classification of proteins structures)2JIF   
SuperfamilyP45954
AlphaFold pdb e-kbP45954   
Human Protein Atlas [tissue]ENSG00000196177-ACADSB [tissue]
HPRD02626
Protein Interaction databases
DIP (DOE-UCLA)P45954
IntAct (EBI)P45954
BioGRIDACADSB
STRING (EMBL)ACADSB
ZODIACACADSB
Ontologies - Pathways
QuickGOP45954
Ontology : AmiGO2-methylacyl-CoA dehydrogenase activity  mitochondrion  mitochondrial matrix  isoleucine catabolic process  isoleucine catabolic process  fatty acid metabolic process  branched-chain amino acid catabolic process  short-branched-chain-acyl-CoA dehydrogenase activity  identical protein binding  flavin adenine dinucleotide binding  isobutyryl-CoA:FAD oxidoreductase activity  
Ontology : EGO-EBI2-methylacyl-CoA dehydrogenase activity  mitochondrion  mitochondrial matrix  isoleucine catabolic process  isoleucine catabolic process  fatty acid metabolic process  branched-chain amino acid catabolic process  short-branched-chain-acyl-CoA dehydrogenase activity  identical protein binding  flavin adenine dinucleotide binding  isobutyryl-CoA:FAD oxidoreductase activity  
Pathways : KEGGBile acid biosynthesis    1- and 2-Methylnaphthalene degradation   
NDEx NetworkACADSB
Atlas of Cancer Signalling NetworkACADSB
Wikipedia pathwaysACADSB
Orthology - Evolution
OrthoDB36
GeneTree (enSembl)ENSG00000196177
Phylogenetic Trees/Animal Genes : TreeFamACADSB
Homologs : HomoloGeneACADSB
Homology/Alignments : Family Browser (UCSC)ACADSB
Gene fusions - Rearrangements
Fusion : QuiverACADSB
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACADSB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACADSB
dbVarACADSB
ClinVarACADSB
MonarchACADSB
1000_GenomesACADSB 
Exome Variant ServerACADSB
GNOMAD BrowserENSG00000196177
Varsome BrowserACADSB
ACMGACADSB variants
VarityP45954
Genomic Variants (DGV)ACADSB [DGVbeta]
DECIPHERACADSB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACADSB 
Mutations
ICGC Data PortalACADSB 
TCGA Data PortalACADSB 
Broad Tumor PortalACADSB
OASIS PortalACADSB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACADSB  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DACADSB
Mutations and Diseases : HGMDACADSB
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaACADSB
DgiDB (Drug Gene Interaction Database)ACADSB
DoCM (Curated mutations)ACADSB
CIViC (Clinical Interpretations of Variants in Cancer)ACADSB
Cancer3DACADSB
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600301    610006   
Orphanet11183   
DisGeNETACADSB
MedgenACADSB
Genetic Testing Registry ACADSB
NextProtP45954 [Medical]
GENETestsACADSB
Target ValidationACADSB
Huge Navigator ACADSB [HugePedia]
ClinGenACADSB
Clinical trials, drugs, therapy
MyCancerGenomeACADSB
Protein Interactions : CTDACADSB
Pharm GKB GenePA24427
PharosP45954
Clinical trialACADSB
Miscellaneous
canSAR (ICR)ACADSB
HarmonizomeACADSB
DataMed IndexACADSB
Probes
Litterature
PubMed51 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXACADSB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:41:20 CEST 2021

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