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ACAN (aggrecan)

Identity

Alias (NCBI)AGC1
AGCAN
CSPG1
CSPGCP
MSK16
SEDK
SSOAOD
HGNC (Hugo) ACAN
HGNC Alias symbCSPGCP
HGNC Alias nameaggrecan proteoglycan
HGNC Previous nameMSK16
 CSPG1
 AGC1
HGNC Previous namechondroitin sulfate proteoglycan 1
 aggrecan 1
LocusID (NCBI) 176
Atlas_Id 53972
Location 15q26.1  [Link to chromosome band 15q26]
Location_base_pair Starts at 88803443 and ends at 88875354 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ABHD2 (15q26.1) / ACAN (15q26.1)ACAN (15q26.1) / ACAN (15q26.1)CCDC97 (19q13.2) / ACAN (15q26.1)
FBLN7 (2q13) / ACAN (15q26.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)ACAN   319
Cards
Entrez_Gene (NCBI)ACAN    aggrecan
AliasesAGC1; AGCAN; CSPG1; CSPGCP; 
MSK16; SEDK; SSOAOD
GeneCards (Weizmann)ACAN
Ensembl hg19 (Hinxton)ENSG00000157766 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157766 [Gene_View]  ENSG00000157766 [Sequence]  chr15:88803443-88875354 [Contig_View]  ACAN [Vega]
ICGC DataPortalENSG00000157766
TCGA cBioPortalACAN
AceView (NCBI)ACAN
Genatlas (Paris)ACAN
SOURCE (Princeton)ACAN
Genetics Home Reference (NIH)ACAN
Genomic and cartography
GoldenPath hg38 (UCSC)ACAN  -     chr15:88803443-88875354 +  15q26.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACAN  -     15q26.1   [Description]    (hg19-Feb_2009)
GoldenPathACAN - 15q26.1 [CytoView hg19]  ACAN - 15q26.1 [CytoView hg38]
ImmunoBaseENSG00000157766
Genome Data Viewer NCBIACAN [Mapview hg19]  
OMIM155760   165800   608361   612813   
Gene and transcription
Genbank (Entrez)AK290723 BC036445 BC150624 BQ182050 BQ446640
RefSeq transcript (Entrez)NM_001135 NM_001369268 NM_013227
Consensus coding sequences : CCDS (NCBI)ACAN
Gene ExpressionACAN [ NCBI-GEO ]   ACAN [ EBI - ARRAY_EXPRESS ]   ACAN [ SEEK ]   ACAN [ MEM ]
Gene Expression Viewer (FireBrowse)ACAN [ Firebrowse - Broad ]
GenevisibleExpression of ACAN in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)176
GTEX Portal (Tissue expression)ACAN
Human Protein AtlasENSG00000157766-ACAN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ACAN
Human Protein Atlas [tissue]ENSG00000157766-ACAN [tissue]
HPRD01123
Protein Interaction databases
BioGRIDACAN
STRING (EMBL)ACAN
ZODIACACAN
Ontologies - Pathways
Litterature
PubMed158 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXACAN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 14:58:09 CEST 2021

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