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ACBD3 (acyl-CoA binding domain containing 3)

Identity

Alias_namesGOLPH1
GOCAP1
golgi complex associated protein 1, 60kDa
acyl-Coenzyme A binding domain containing 3
Alias_symbol (synonym)GCP60
PAP7
Other alias
HGNC (Hugo) ACBD3
LocusID (NCBI) 64746
Atlas_Id 49848
Location 1q42.12  [Link to chromosome band 1q42]
Location_base_pair Starts at 226144679 and ends at 226186722 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ACBD3 (1q42.12) / BOLA2 (16p11.2)ESRRG (1q41) / ACBD3 (1q42.12)MAVS (20p13) / ACBD3 (1q42.12)
ESRRG 1q41 / ACBD3 1q42.12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACBD3   15453
Cards
Entrez_Gene (NCBI)ACBD3  64746  acyl-CoA binding domain containing 3
AliasesGCP60; GOCAP1; GOLPH1; PAP7
GeneCards (Weizmann)ACBD3
Ensembl hg19 (Hinxton)ENSG00000182827 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182827 [Gene_View]  chr1:226144679-226186722 [Contig_View]  ACBD3 [Vega]
ICGC DataPortalENSG00000182827
TCGA cBioPortalACBD3
AceView (NCBI)ACBD3
Genatlas (Paris)ACBD3
WikiGenes64746
SOURCE (Princeton)ACBD3
Genetics Home Reference (NIH)ACBD3
Genomic and cartography
GoldenPath hg38 (UCSC)ACBD3  -     chr1:226144679-226186722 -  1q42.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACBD3  -     1q42.12   [Description]    (hg19-Feb_2009)
EnsemblACBD3 - 1q42.12 [CytoView hg19]  ACBD3 - 1q42.12 [CytoView hg38]
Mapping of homologs : NCBIACBD3 [Mapview hg19]  ACBD3 [Mapview hg38]
OMIM606809   
Gene and transcription
Genbank (Entrez)AB043587 AF020762 AK025520 AK057118 AK314468
RefSeq transcript (Entrez)NM_022735
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACBD3
Cluster EST : UnigeneHs.520207 [ NCBI ]
CGAP (NCI)Hs.520207
Alternative Splicing GalleryENSG00000182827
Gene ExpressionACBD3 [ NCBI-GEO ]   ACBD3 [ EBI - ARRAY_EXPRESS ]   ACBD3 [ SEEK ]   ACBD3 [ MEM ]
Gene Expression Viewer (FireBrowse)ACBD3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64746
GTEX Portal (Tissue expression)ACBD3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H3P7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H3P7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H3P7
Splice isoforms : SwissVarQ9H3P7
PhosPhoSitePlusQ9H3P7
Domaine pattern : Prosite (Expaxy)ACB_1 (PS00880)    ACB_2 (PS51228)    GOLD (PS50866)   
Domains : Interpro (EBI)Acyl-CoA-binding_prot_CS    Acyl-CoA-binding_protein    FERM/acyl-CoA-bd_prot_3-hlx    GOLD_dom   
Domain families : Pfam (Sanger)ACBP (PF00887)    GOLD_2 (PF13897)   
Domain families : Pfam (NCBI)pfam00887    pfam13897   
Conserved Domain (NCBI)ACBD3
DMDM Disease mutations64746
Blocks (Seattle)ACBD3
PDB (SRS)2N72    2N73    5LZ1    5LZ3    5LZ6    5TDQ   
PDB (PDBSum)2N72    2N73    5LZ1    5LZ3    5LZ6    5TDQ   
PDB (IMB)2N72    2N73    5LZ1    5LZ3    5LZ6    5TDQ   
PDB (RSDB)2N72    2N73    5LZ1    5LZ3    5LZ6    5TDQ   
Structural Biology KnowledgeBase2N72    2N73    5LZ1    5LZ3    5LZ6    5TDQ   
SCOP (Structural Classification of Proteins)2N72    2N73    5LZ1    5LZ3    5LZ6    5TDQ   
CATH (Classification of proteins structures)2N72    2N73    5LZ1    5LZ3    5LZ6    5TDQ   
SuperfamilyQ9H3P7
Human Protein AtlasENSG00000182827
Peptide AtlasQ9H3P7
HPRD08432
IPIIPI00009315   IPI00012525   IPI00985160   
Protein Interaction databases
DIP (DOE-UCLA)Q9H3P7
IntAct (EBI)Q9H3P7
FunCoupENSG00000182827
BioGRIDACBD3
STRING (EMBL)ACBD3
ZODIACACBD3
Ontologies - Pathways
QuickGOQ9H3P7
Ontology : AmiGOfatty-acyl-CoA binding  Golgi membrane  protein binding  mitochondrion  Golgi apparatus  steroid biosynthetic process  transport  membrane  integral component of membrane  protein kinase A regulatory subunit binding  
Ontology : EGO-EBIfatty-acyl-CoA binding  Golgi membrane  protein binding  mitochondrion  Golgi apparatus  steroid biosynthetic process  transport  membrane  integral component of membrane  protein kinase A regulatory subunit binding  
NDEx NetworkACBD3
Atlas of Cancer Signalling NetworkACBD3
Wikipedia pathwaysACBD3
Orthology - Evolution
OrthoDB64746
GeneTree (enSembl)ENSG00000182827
Phylogenetic Trees/Animal Genes : TreeFamACBD3
HOVERGENQ9H3P7
HOGENOMQ9H3P7
Homologs : HomoloGeneACBD3
Homology/Alignments : Family Browser (UCSC)ACBD3
Gene fusions - Rearrangements
Fusion : MitelmanESRRG/ACBD3 [1q41/1q42.12]  [del(1)(q41q42)]  [del(1)(q42)]  
[t(1;1)(q41;q42)]  
Fusion: TCGAESRRG 1q41 ACBD3 1q42.12 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACBD3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACBD3
dbVarACBD3
ClinVarACBD3
1000_GenomesACBD3 
Exome Variant ServerACBD3
ExAC (Exome Aggregation Consortium)ACBD3 (select the gene name)
Genetic variants : HAPMAP64746
Genomic Variants (DGV)ACBD3 [DGVbeta]
DECIPHERACBD3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACBD3 
Mutations
ICGC Data PortalACBD3 
TCGA Data PortalACBD3 
Broad Tumor PortalACBD3
OASIS PortalACBD3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACBD3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACBD3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACBD3
DgiDB (Drug Gene Interaction Database)ACBD3
DoCM (Curated mutations)ACBD3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACBD3 (select a term)
intoGenACBD3
Cancer3DACBD3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606809   
Orphanet
MedgenACBD3
Genetic Testing Registry ACBD3
NextProtQ9H3P7 [Medical]
TSGene64746
GENETestsACBD3
Target ValidationACBD3
Huge Navigator ACBD3 [HugePedia]
snp3D : Map Gene to Disease64746
BioCentury BCIQACBD3
ClinGenACBD3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64746
Chemical/Pharm GKB GenePA28803
Clinical trialACBD3
Miscellaneous
canSAR (ICR)ACBD3 (select the gene name)
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACBD3
EVEXACBD3
GoPubMedACBD3
iHOPACBD3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:45:57 CEST 2017

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