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ACBD4 (acyl-CoA binding domain containing 4)

Identity

Alias_namesacyl-Coenzyme A binding domain containing 4
Alias_symbol (synonym)FLJ13322
Other aliasHMFT0700
HGNC (Hugo) ACBD4
LocusID (NCBI) 79777
Atlas_Id 60078
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 45135647 and ends at 45144181 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACBD4 (17q21.31) / TNFAIP8 (5q23.1)ACBD4 (17q21.31) / TRIM25 (17q22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACBD4   23337
Cards
Entrez_Gene (NCBI)ACBD4  79777  acyl-CoA binding domain containing 4
AliasesHMFT0700
GeneCards (Weizmann)ACBD4
Ensembl hg19 (Hinxton)ENSG00000181513 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181513 [Gene_View]  chr17:45135647-45144181 [Contig_View]  ACBD4 [Vega]
ICGC DataPortalENSG00000181513
TCGA cBioPortalACBD4
AceView (NCBI)ACBD4
Genatlas (Paris)ACBD4
WikiGenes79777
SOURCE (Princeton)ACBD4
Genetics Home Reference (NIH)ACBD4
Genomic and cartography
GoldenPath hg38 (UCSC)ACBD4  -     chr17:45135647-45144181 +  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACBD4  -     17q21.31   [Description]    (hg19-Feb_2009)
EnsemblACBD4 - 17q21.31 [CytoView hg19]  ACBD4 - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBIACBD4 [Mapview hg19]  ACBD4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB073387 AK023384 AK075104 AK296167 AK316359
RefSeq transcript (Entrez)NM_001135704 NM_001135705 NM_001135706 NM_001135707 NM_001321352 NM_001321353 NM_024722
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACBD4
Cluster EST : UnigeneHs.110298 [ NCBI ]
CGAP (NCI)Hs.110298
Alternative Splicing GalleryENSG00000181513
Gene ExpressionACBD4 [ NCBI-GEO ]   ACBD4 [ EBI - ARRAY_EXPRESS ]   ACBD4 [ SEEK ]   ACBD4 [ MEM ]
Gene Expression Viewer (FireBrowse)ACBD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79777
GTEX Portal (Tissue expression)ACBD4
Human Protein AtlasENSG00000181513-ACBD4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NC06   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NC06  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NC06
Splice isoforms : SwissVarQ8NC06
PhosPhoSitePlusQ8NC06
Domaine pattern : Prosite (Expaxy)ACB_1 (PS00880)    ACB_2 (PS51228)   
Domains : Interpro (EBI)Acyl-CoA-binding_prot_CS    Acyl-CoA-binding_protein    FERM/acyl-CoA-bd_prot_3-hlx   
Domain families : Pfam (Sanger)ACBP (PF00887)   
Domain families : Pfam (NCBI)pfam00887   
Conserved Domain (NCBI)ACBD4
DMDM Disease mutations79777
Blocks (Seattle)ACBD4
PDB (SRS)2WH5   
PDB (PDBSum)2WH5   
PDB (IMB)2WH5   
PDB (RSDB)2WH5   
Structural Biology KnowledgeBase2WH5   
SCOP (Structural Classification of Proteins)2WH5   
CATH (Classification of proteins structures)2WH5   
SuperfamilyQ8NC06
Human Protein Atlas [tissue]ENSG00000181513-ACBD4 [tissue]
Peptide AtlasQ8NC06
IPIIPI00419689   IPI00604619   IPI00216847   
Protein Interaction databases
DIP (DOE-UCLA)Q8NC06
IntAct (EBI)Q8NC06
FunCoupENSG00000181513
BioGRIDACBD4
STRING (EMBL)ACBD4
ZODIACACBD4
Ontologies - Pathways
QuickGOQ8NC06
Ontology : AmiGOfatty-acyl-CoA binding  lipid binding  
Ontology : EGO-EBIfatty-acyl-CoA binding  lipid binding  
NDEx NetworkACBD4
Atlas of Cancer Signalling NetworkACBD4
Wikipedia pathwaysACBD4
Orthology - Evolution
OrthoDB79777
GeneTree (enSembl)ENSG00000181513
Phylogenetic Trees/Animal Genes : TreeFamACBD4
HOVERGENQ8NC06
HOGENOMQ8NC06
Homologs : HomoloGeneACBD4
Homology/Alignments : Family Browser (UCSC)ACBD4
Gene fusions - Rearrangements
Tumor Fusion PortalACBD4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACBD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACBD4
dbVarACBD4
ClinVarACBD4
1000_GenomesACBD4 
Exome Variant ServerACBD4
ExAC (Exome Aggregation Consortium)ENSG00000181513
GNOMAD BrowserENSG00000181513
Genetic variants : HAPMAP79777
Genomic Variants (DGV)ACBD4 [DGVbeta]
DECIPHERACBD4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACBD4 
Mutations
ICGC Data PortalACBD4 
TCGA Data PortalACBD4 
Broad Tumor PortalACBD4
OASIS PortalACBD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACBD4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACBD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACBD4
DgiDB (Drug Gene Interaction Database)ACBD4
DoCM (Curated mutations)ACBD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACBD4 (select a term)
intoGenACBD4
Cancer3DACBD4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETACBD4
MedgenACBD4
Genetic Testing Registry ACBD4
NextProtQ8NC06 [Medical]
TSGene79777
GENETestsACBD4
Target ValidationACBD4
Huge Navigator ACBD4 [HugePedia]
snp3D : Map Gene to Disease79777
BioCentury BCIQACBD4
ClinGenACBD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79777
Chemical/Pharm GKB GenePA134897893
Clinical trialACBD4
Miscellaneous
canSAR (ICR)ACBD4 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACBD4
EVEXACBD4
GoPubMedACBD4
iHOPACBD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:34:50 CET 2017

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