Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ACBD5 (acyl-CoA binding domain containing 5)

Identity

Alias_namesacyl-Coenzyme A binding domain containing 5
Alias_symbol (synonym)DKFZp434A2417
KIAA1996
Other alias-
HGNC (Hugo) ACBD5
LocusID (NCBI) 91452
Atlas_Id 55508
Location 10p12.1  [Link to chromosome band 10p12]
Location_base_pair Starts at 27195214 and ends at 27242139 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACBD5 (10p12.1) / RET (10q11.21)ACBD5 (10p12.1) / SH3BP4 (2q37.2)ACBD5 (10p12.1) / ZEB1 (10p11.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACBD5   23338
Cards
Entrez_Gene (NCBI)ACBD5  91452  acyl-CoA binding domain containing 5
Aliases
GeneCards (Weizmann)ACBD5
Ensembl hg19 (Hinxton)ENSG00000107897 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000107897 [Gene_View]  chr10:27195214-27242139 [Contig_View]  ACBD5 [Vega]
ICGC DataPortalENSG00000107897
TCGA cBioPortalACBD5
AceView (NCBI)ACBD5
Genatlas (Paris)ACBD5
WikiGenes91452
SOURCE (Princeton)ACBD5
Genetics Home Reference (NIH)ACBD5
Genomic and cartography
GoldenPath hg38 (UCSC)ACBD5  -     chr10:27195214-27242139 -  10p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACBD5  -     10p12.1   [Description]    (hg19-Feb_2009)
EnsemblACBD5 - 10p12.1 [CytoView hg19]  ACBD5 - 10p12.1 [CytoView hg38]
Mapping of homologs : NCBIACBD5 [Mapview hg19]  ACBD5 [Mapview hg38]
OMIM616618   
Gene and transcription
Genbank (Entrez)AB082527 AF505653 AI453384 AK057469 AK294510
RefSeq transcript (Entrez)NM_001042473 NM_001271512 NM_001301251 NM_001301252 NM_001301253 NM_001301254 NM_145698
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACBD5
Cluster EST : UnigeneHs.530597 [ NCBI ]
CGAP (NCI)Hs.530597
Alternative Splicing GalleryENSG00000107897
Gene ExpressionACBD5 [ NCBI-GEO ]   ACBD5 [ EBI - ARRAY_EXPRESS ]   ACBD5 [ SEEK ]   ACBD5 [ MEM ]
Gene Expression Viewer (FireBrowse)ACBD5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91452
GTEX Portal (Tissue expression)ACBD5
Human Protein AtlasENSG00000107897-ACBD5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T8D3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T8D3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T8D3
Splice isoforms : SwissVarQ5T8D3
PhosPhoSitePlusQ5T8D3
Domaine pattern : Prosite (Expaxy)ACB_1 (PS00880)    ACB_2 (PS51228)   
Domains : Interpro (EBI)ACBD5    Acyl-CoA-binding_prot_CS    Acyl-CoA-binding_protein    FERM/acyl-CoA-bd_prot_3-hlx   
Domain families : Pfam (Sanger)ACBP (PF00887)   
Domain families : Pfam (NCBI)pfam00887   
Conserved Domain (NCBI)ACBD5
DMDM Disease mutations91452
Blocks (Seattle)ACBD5
PDB (SRS)3FLV   
PDB (PDBSum)3FLV   
PDB (IMB)3FLV   
PDB (RSDB)3FLV   
Structural Biology KnowledgeBase3FLV   
SCOP (Structural Classification of Proteins)3FLV   
CATH (Classification of proteins structures)3FLV   
SuperfamilyQ5T8D3
Human Protein Atlas [tissue]ENSG00000107897-ACBD5 [tissue]
Peptide AtlasQ5T8D3
HPRD12415
IPIIPI00186681   IPI00644427   IPI00550377   IPI00640010   IPI00922096   IPI00643997   IPI00646700   
Protein Interaction databases
DIP (DOE-UCLA)Q5T8D3
IntAct (EBI)Q5T8D3
FunCoupENSG00000107897
BioGRIDACBD5
STRING (EMBL)ACBD5
ZODIACACBD5
Ontologies - Pathways
QuickGOQ5T8D3
Ontology : AmiGOfatty-acyl-CoA binding  molecular_function  nucleus  nucleoplasm  peroxisome  peroxisomal membrane  transport  lipid binding  membrane  integral component of membrane  macroautophagy  pexophagy  aggrephagy  cellular lipid metabolic process  
Ontology : EGO-EBIfatty-acyl-CoA binding  molecular_function  nucleus  nucleoplasm  peroxisome  peroxisomal membrane  transport  lipid binding  membrane  integral component of membrane  macroautophagy  pexophagy  aggrephagy  cellular lipid metabolic process  
NDEx NetworkACBD5
Atlas of Cancer Signalling NetworkACBD5
Wikipedia pathwaysACBD5
Orthology - Evolution
OrthoDB91452
GeneTree (enSembl)ENSG00000107897
Phylogenetic Trees/Animal Genes : TreeFamACBD5
HOVERGENQ5T8D3
HOGENOMQ5T8D3
Homologs : HomoloGeneACBD5
Homology/Alignments : Family Browser (UCSC)ACBD5
Gene fusions - Rearrangements
Tumor Fusion PortalACBD5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACBD5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACBD5
dbVarACBD5
ClinVarACBD5
1000_GenomesACBD5 
Exome Variant ServerACBD5
ExAC (Exome Aggregation Consortium)ENSG00000107897
GNOMAD BrowserENSG00000107897
Genetic variants : HAPMAP91452
Genomic Variants (DGV)ACBD5 [DGVbeta]
DECIPHERACBD5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACBD5 
Mutations
ICGC Data PortalACBD5 
TCGA Data PortalACBD5 
Broad Tumor PortalACBD5
OASIS PortalACBD5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACBD5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACBD5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Eye diseases - LOVD
BioMutasearch ACBD5
DgiDB (Drug Gene Interaction Database)ACBD5
DoCM (Curated mutations)ACBD5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACBD5 (select a term)
intoGenACBD5
Cancer3DACBD5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616618   
Orphanet
DisGeNETACBD5
MedgenACBD5
Genetic Testing Registry ACBD5
NextProtQ5T8D3 [Medical]
TSGene91452
GENETestsACBD5
Target ValidationACBD5
Huge Navigator ACBD5 [HugePedia]
snp3D : Map Gene to Disease91452
BioCentury BCIQACBD5
ClinGenACBD5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91452
Chemical/Pharm GKB GenePA134892991
Clinical trialACBD5
Miscellaneous
canSAR (ICR)ACBD5 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACBD5
EVEXACBD5
GoPubMedACBD5
iHOPACBD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:01:47 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.