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ACCS (1-aminocyclopropane-1-carboxylate synthase homolog (inactive))

Identity

Alias_names1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)
Alias_symbol (synonym)PHACS
ACS
Other alias
HGNC (Hugo) ACCS
LocusID (NCBI) 84680
Atlas_Id 54101
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 44066179 and ends at 44084019 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ACCS (11p11.2) / EXT2 (11p11.2)PRDM11 (11p11.2) / ACCS (11p11.2)PRDM11 11p11.2 / ACCS 11p11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACCS   23989
Cards
Entrez_Gene (NCBI)ACCS  84680  1-aminocyclopropane-1-carboxylate synthase homolog (inactive)
AliasesACS; PHACS
GeneCards (Weizmann)ACCS
Ensembl hg19 (Hinxton)ENSG00000110455 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000110455 [Gene_View]  chr11:44066179-44084019 [Contig_View]  ACCS [Vega]
ICGC DataPortalENSG00000110455
TCGA cBioPortalACCS
AceView (NCBI)ACCS
Genatlas (Paris)ACCS
WikiGenes84680
SOURCE (Princeton)ACCS
Genetics Home Reference (NIH)ACCS
Genomic and cartography
GoldenPath hg38 (UCSC)ACCS  -     chr11:44066179-44084019 +  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACCS  -     11p11.2   [Description]    (hg19-Feb_2009)
EnsemblACCS - 11p11.2 [CytoView hg19]  ACCS - 11p11.2 [CytoView hg38]
Mapping of homologs : NCBIACCS [Mapview hg19]  ACCS [Mapview hg38]
OMIM608405   
Gene and transcription
Genbank (Entrez)AK057649 AK302515 AK304074 AK307380 AL833533
RefSeq transcript (Entrez)NM_001127219 NM_032592
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACCS
Cluster EST : UnigeneHs.126706 [ NCBI ]
CGAP (NCI)Hs.126706
Alternative Splicing GalleryENSG00000110455
Gene ExpressionACCS [ NCBI-GEO ]   ACCS [ EBI - ARRAY_EXPRESS ]   ACCS [ SEEK ]   ACCS [ MEM ]
Gene Expression Viewer (FireBrowse)ACCS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84680
GTEX Portal (Tissue expression)ACCS
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96QU6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96QU6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96QU6
Splice isoforms : SwissVarQ96QU6
PhosPhoSitePlusQ96QU6
Domains : Interpro (EBI)Aminotransferase_I/II    PyrdxlP-dep_Trfase    PyrdxlP-dep_Trfase_major_sub1    PyrdxlP-dep_Trfase_major_sub2   
Domain families : Pfam (Sanger)Aminotran_1_2 (PF00155)   
Domain families : Pfam (NCBI)pfam00155   
Conserved Domain (NCBI)ACCS
DMDM Disease mutations84680
Blocks (Seattle)ACCS
SuperfamilyQ96QU6
Human Protein AtlasENSG00000110455
Peptide AtlasQ96QU6
HPRD10524
IPIIPI00411817   IPI00910770   IPI00979959   
Protein Interaction databases
DIP (DOE-UCLA)Q96QU6
IntAct (EBI)Q96QU6
FunCoupENSG00000110455
BioGRIDACCS
STRING (EMBL)ACCS
ZODIACACCS
Ontologies - Pathways
QuickGOQ96QU6
Ontology : AmiGOprotein binding  biosynthetic process  1-aminocyclopropane-1-carboxylate synthase activity  pyridoxal phosphate binding  identical protein binding  protein homodimerization activity  
Ontology : EGO-EBIprotein binding  biosynthetic process  1-aminocyclopropane-1-carboxylate synthase activity  pyridoxal phosphate binding  identical protein binding  protein homodimerization activity  
NDEx NetworkACCS
Atlas of Cancer Signalling NetworkACCS
Wikipedia pathwaysACCS
Orthology - Evolution
OrthoDB84680
GeneTree (enSembl)ENSG00000110455
Phylogenetic Trees/Animal Genes : TreeFamACCS
HOVERGENQ96QU6
HOGENOMQ96QU6
Homologs : HomoloGeneACCS
Homology/Alignments : Family Browser (UCSC)ACCS
Gene fusions - Rearrangements
Fusion : MitelmanACCS/EXT2 [11p11.2/11p11.2]  
Fusion : MitelmanPRDM11/ACCS [11p11.2/11p11.2]  [t(11;11)(p11;p11)]  
Fusion: TCGAPRDM11 11p11.2 ACCS 11p11.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACCS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACCS
dbVarACCS
ClinVarACCS
1000_GenomesACCS 
Exome Variant ServerACCS
ExAC (Exome Aggregation Consortium)ACCS (select the gene name)
Genetic variants : HAPMAP84680
Genomic Variants (DGV)ACCS [DGVbeta]
DECIPHERACCS [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACCS 
Mutations
ICGC Data PortalACCS 
TCGA Data PortalACCS 
Broad Tumor PortalACCS
OASIS PortalACCS [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACCS  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACCS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACCS
DgiDB (Drug Gene Interaction Database)ACCS
DoCM (Curated mutations)ACCS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACCS (select a term)
intoGenACCS
Cancer3DACCS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608405   
Orphanet
MedgenACCS
Genetic Testing Registry ACCS
NextProtQ96QU6 [Medical]
TSGene84680
GENETestsACCS
Target ValidationACCS
Huge Navigator ACCS [HugePedia]
snp3D : Map Gene to Disease84680
BioCentury BCIQACCS
ClinGenACCS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84680
Chemical/Pharm GKB GenePA162375284
Clinical trialACCS
Miscellaneous
canSAR (ICR)ACCS (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACCS
EVEXACCS
GoPubMedACCS
iHOPACCS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 18:55:52 CEST 2017

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