Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ACCSL (1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like)

Identity

Alias_names1-aminocyclopropane-1-carboxylate synthase homolog (Arabidopsis)(non-functional)-like
Other alias-
HGNC (Hugo) ACCSL
LocusID (NCBI) 390110
Atlas_Id 60081
Location 11p11.2  [Link to chromosome band 11p11]
Location_base_pair Starts at 44047981 and ends at 44059977 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACCSL   34391
Cards
Entrez_Gene (NCBI)ACCSL  390110  1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like
Aliases
GeneCards (Weizmann)ACCSL
Ensembl hg19 (Hinxton)ENSG00000205126 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205126 [Gene_View]  chr11:44047981-44059977 [Contig_View]  ACCSL [Vega]
ICGC DataPortalENSG00000205126
TCGA cBioPortalACCSL
AceView (NCBI)ACCSL
Genatlas (Paris)ACCSL
WikiGenes390110
SOURCE (Princeton)ACCSL
Genetics Home Reference (NIH)ACCSL
Genomic and cartography
GoldenPath hg38 (UCSC)ACCSL  -     chr11:44047981-44059977 +  11p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACCSL  -     11p11.2   [Description]    (hg19-Feb_2009)
EnsemblACCSL - 11p11.2 [CytoView hg19]  ACCSL - 11p11.2 [CytoView hg38]
Mapping of homologs : NCBIACCSL [Mapview hg19]  ACCSL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB231732 AB231733 AB231734 BC144554 DW009984
RefSeq transcript (Entrez)NM_001031854
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACCSL
Cluster EST : UnigeneHs.558851 [ NCBI ]
CGAP (NCI)Hs.558851
Alternative Splicing GalleryENSG00000205126
Gene ExpressionACCSL [ NCBI-GEO ]   ACCSL [ EBI - ARRAY_EXPRESS ]   ACCSL [ SEEK ]   ACCSL [ MEM ]
Gene Expression Viewer (FireBrowse)ACCSL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390110
GTEX Portal (Tissue expression)ACCSL
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4AC99   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4AC99  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4AC99
Splice isoforms : SwissVarQ4AC99
PhosPhoSitePlusQ4AC99
Domains : Interpro (EBI)Aminotransferase_I/II    PyrdxlP-dep_Trfase    PyrdxlP-dep_Trfase_major_sub1    PyrdxlP-dep_Trfase_major_sub2   
Domain families : Pfam (Sanger)Aminotran_1_2 (PF00155)   
Domain families : Pfam (NCBI)pfam00155   
Conserved Domain (NCBI)ACCSL
DMDM Disease mutations390110
Blocks (Seattle)ACCSL
SuperfamilyQ4AC99
Human Protein AtlasENSG00000205126
Peptide AtlasQ4AC99
IPIIPI00399296   IPI00985069   
Protein Interaction databases
DIP (DOE-UCLA)Q4AC99
IntAct (EBI)Q4AC99
FunCoupENSG00000205126
BioGRIDACCSL
STRING (EMBL)ACCSL
ZODIACACCSL
Ontologies - Pathways
QuickGOQ4AC99
Ontology : AmiGOcatalytic activity  biosynthetic process  pyridoxal phosphate binding  
Ontology : EGO-EBIcatalytic activity  biosynthetic process  pyridoxal phosphate binding  
NDEx NetworkACCSL
Atlas of Cancer Signalling NetworkACCSL
Wikipedia pathwaysACCSL
Orthology - Evolution
OrthoDB390110
GeneTree (enSembl)ENSG00000205126
Phylogenetic Trees/Animal Genes : TreeFamACCSL
HOVERGENQ4AC99
HOGENOMQ4AC99
Homologs : HomoloGeneACCSL
Homology/Alignments : Family Browser (UCSC)ACCSL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACCSL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACCSL
dbVarACCSL
ClinVarACCSL
1000_GenomesACCSL 
Exome Variant ServerACCSL
ExAC (Exome Aggregation Consortium)ACCSL (select the gene name)
Genetic variants : HAPMAP390110
Genomic Variants (DGV)ACCSL [DGVbeta]
DECIPHERACCSL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACCSL 
Mutations
ICGC Data PortalACCSL 
TCGA Data PortalACCSL 
Broad Tumor PortalACCSL
OASIS PortalACCSL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACCSL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACCSL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACCSL
DgiDB (Drug Gene Interaction Database)ACCSL
DoCM (Curated mutations)ACCSL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACCSL (select a term)
intoGenACCSL
Cancer3DACCSL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenACCSL
Genetic Testing Registry ACCSL
NextProtQ4AC99 [Medical]
TSGene390110
GENETestsACCSL
Target ValidationACCSL
Huge Navigator ACCSL [HugePedia]
snp3D : Map Gene to Disease390110
BioCentury BCIQACCSL
ClinGenACCSL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390110
Chemical/Pharm GKB GenePA164714805
Clinical trialACCSL
Miscellaneous
canSAR (ICR)ACCSL (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACCSL
EVEXACCSL
GoPubMedACCSL
iHOPACCSL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:37:13 CEST 2017

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