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ACKR1 (atypical chemokine receptor 1 (Duffy blood group))

Identity

Alias_namesFY
DARC
Duffy blood group
Duffy blood group, chemokine receptor
Duffy blood group, atypical chemokine receptor
Alias_symbol (synonym)CCBP1
GPD
Dfy
CD234
Other aliasDARC/ACKR1
GpFy
WBCQ1
HGNC (Hugo) ACKR1
LocusID (NCBI) 2532
Atlas_Id 53860
Location 1q23.2  [Link to chromosome band 1q23]
Location_base_pair Starts at 159205259 and ends at 159206500 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ACKR1 (1q23.2) / EMP1 (12p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACKR1   4035
LRG (Locus Reference Genomic)LRG_801
Cards
Entrez_Gene (NCBI)ACKR1  2532  atypical chemokine receptor 1 (Duffy blood group)
AliasesCCBP1; CD234; DARC; DARC/ACKR1; 
Dfy; FY; GPD; GpFy; WBCQ1
GeneCards (Weizmann)ACKR1
Ensembl hg19 (Hinxton)ENSG00000213088 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213088 [Gene_View]  chr1:159205259-159206500 [Contig_View]  ACKR1 [Vega]
ICGC DataPortalENSG00000213088
TCGA cBioPortalACKR1
AceView (NCBI)ACKR1
Genatlas (Paris)ACKR1
WikiGenes2532
SOURCE (Princeton)ACKR1
Genetics Home Reference (NIH)ACKR1
Genomic and cartography
GoldenPath hg38 (UCSC)ACKR1  -     chr1:159205259-159206500 +  1q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ACKR1  -     1q23.2   [Description]    (hg19-Feb_2009)
EnsemblACKR1 - 1q23.2 [CytoView hg19]  ACKR1 - 1q23.2 [CytoView hg38]
Mapping of homologs : NCBIACKR1 [Mapview hg19]  ACKR1 [Mapview hg38]
OMIM110700   611162   611862   613665   
Gene and transcription
Genbank (Entrez)AF030521 AK291593 AK309521 AY167991 BC017817
RefSeq transcript (Entrez)NM_001122951 NM_002036
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ACKR1
Cluster EST : UnigeneHs.153381 [ NCBI ]
CGAP (NCI)Hs.153381
Alternative Splicing GalleryENSG00000213088
Gene ExpressionACKR1 [ NCBI-GEO ]   ACKR1 [ EBI - ARRAY_EXPRESS ]   ACKR1 [ SEEK ]   ACKR1 [ MEM ]
Gene Expression Viewer (FireBrowse)ACKR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2532
GTEX Portal (Tissue expression)ACKR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16570   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16570  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16570
Splice isoforms : SwissVarQ16570
PhosPhoSitePlusQ16570
Domains : Interpro (EBI)Duffy_chemokine_rcpt   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ACKR1
DMDM Disease mutations2532
Blocks (Seattle)ACKR1
PDB (SRS)4NUU    4NUV   
PDB (PDBSum)4NUU    4NUV   
PDB (IMB)4NUU    4NUV   
PDB (RSDB)4NUU    4NUV   
Structural Biology KnowledgeBase4NUU    4NUV   
SCOP (Structural Classification of Proteins)4NUU    4NUV   
CATH (Classification of proteins structures)4NUU    4NUV   
SuperfamilyQ16570
Human Protein AtlasENSG00000213088
Peptide AtlasQ16570
HPRD00192
IPIIPI00002940   IPI00215964   IPI00643654   
Protein Interaction databases
DIP (DOE-UCLA)Q16570
IntAct (EBI)Q16570
FunCoupENSG00000213088
BioGRIDACKR1
STRING (EMBL)ACKR1
ZODIACACKR1
Ontologies - Pathways
QuickGOQ16570
Ontology : AmiGOreceptor activity  transmembrane signaling receptor activity  G-protein coupled receptor activity  early endosome  plasma membrane  defense response  inflammatory response  G-protein coupled receptor signaling pathway  integral component of membrane  C-C chemokine binding  regulation of chemokine production  recycling endosome  chemokine-mediated signaling pathway  
Ontology : EGO-EBIreceptor activity  transmembrane signaling receptor activity  G-protein coupled receptor activity  early endosome  plasma membrane  defense response  inflammatory response  G-protein coupled receptor signaling pathway  integral component of membrane  C-C chemokine binding  regulation of chemokine production  recycling endosome  chemokine-mediated signaling pathway  
NDEx NetworkACKR1
Atlas of Cancer Signalling NetworkACKR1
Wikipedia pathwaysACKR1
Orthology - Evolution
OrthoDB2532
GeneTree (enSembl)ENSG00000213088
Phylogenetic Trees/Animal Genes : TreeFamACKR1
HOVERGENQ16570
HOGENOMQ16570
Homologs : HomoloGeneACKR1
Homology/Alignments : Family Browser (UCSC)ACKR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACKR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACKR1
dbVarACKR1
ClinVarACKR1
1000_GenomesACKR1 
Exome Variant ServerACKR1
ExAC (Exome Aggregation Consortium)ACKR1 (select the gene name)
Genetic variants : HAPMAP2532
Genomic Variants (DGV)ACKR1 [DGVbeta]
DECIPHERACKR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisACKR1 
Mutations
ICGC Data PortalACKR1 
TCGA Data PortalACKR1 
Broad Tumor PortalACKR1
OASIS PortalACKR1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDACKR1
BioMutasearch ACKR1
DgiDB (Drug Gene Interaction Database)ACKR1
DoCM (Curated mutations)ACKR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACKR1 (select a term)
intoGenACKR1
Cancer3DACKR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM110700    611162    611862    613665   
Orphanet
MedgenACKR1
Genetic Testing Registry ACKR1
NextProtQ16570 [Medical]
TSGene2532
GENETestsACKR1
Huge Navigator ACKR1 [HugePedia]
snp3D : Map Gene to Disease2532
BioCentury BCIQACKR1
ClinGenACKR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2532
Chemical/Pharm GKB GenePA28451
Clinical trialACKR1
Miscellaneous
canSAR (ICR)ACKR1 (select the gene name)
Probes
Litterature
PubMed125 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACKR1
EVEXACKR1
GoPubMedACKR1
iHOPACKR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:04:44 CEST 2017

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