Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ACMSD (aminocarboxymuconate semialdehyde decarboxylase)

Identity

Other alias-
HGNC (Hugo) ACMSD
LocusID (NCBI) 130013
Atlas_Id 60084
Location 2q21.3  [Link to chromosome band 2q21]
Location_base_pair Starts at 135596186 and ends at 135659602 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RAB3GAP1 (2q21.3) / ACMSD (2q21.3)SESTD1 (2q31.2) / ACMSD (2q21.3)RAB3GAP1 ACMSD
SESTD1 ACMSD

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ACMSD   19288
Cards
Entrez_Gene (NCBI)ACMSD  130013  aminocarboxymuconate semialdehyde decarboxylase
Aliases
GeneCards (Weizmann)ACMSD
Ensembl hg19 (Hinxton)ENSG00000153086 [Gene_View]  chr2:135596186-135659602 [Contig_View]  ACMSD [Vega]
Ensembl hg38 (Hinxton)ENSG00000153086 [Gene_View]  chr2:135596186-135659602 [Contig_View]  ACMSD [Vega]
ICGC DataPortalENSG00000153086
TCGA cBioPortalACMSD
AceView (NCBI)ACMSD
Genatlas (Paris)ACMSD
WikiGenes130013
SOURCE (Princeton)ACMSD
Genetics Home Reference (NIH)ACMSD
Genomic and cartography
GoldenPath hg19 (UCSC)ACMSD  -     chr2:135596186-135659602 +  2q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ACMSD  -     2q21.3   [Description]    (hg38-Dec_2013)
EnsemblACMSD - 2q21.3 [CytoView hg19]  ACMSD - 2q21.3 [CytoView hg38]
Mapping of homologs : NCBIACMSD [Mapview hg19]  ACMSD [Mapview hg38]
OMIM608889   
Gene and transcription
Genbank (Entrez)AB071418 AK125008 BC016018 BC107420 BG428338
RefSeq transcript (Entrez)NM_001307983 NM_138326
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929304
Consensus coding sequences : CCDS (NCBI)ACMSD
Cluster EST : UnigeneHs.655728 [ NCBI ]
CGAP (NCI)Hs.655728
Alternative Splicing GalleryENSG00000153086
Gene ExpressionACMSD [ NCBI-GEO ]   ACMSD [ EBI - ARRAY_EXPRESS ]   ACMSD [ SEEK ]   ACMSD [ MEM ]
Gene Expression Viewer (FireBrowse)ACMSD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)130013
GTEX Portal (Tissue expression)ACMSD
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TDX5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TDX5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TDX5
Splice isoforms : SwissVarQ8TDX5
Catalytic activity : Enzyme4.1.1.45 [ Enzyme-Expasy ]   4.1.1.454.1.1.45 [ IntEnz-EBI ]   4.1.1.45 [ BRENDA ]   4.1.1.45 [ KEGG ]   
PhosPhoSitePlusQ8TDX5
Domains : Interpro (EBI)Amidohydro_2   
Domain families : Pfam (Sanger)Amidohydro_2 (PF04909)   
Domain families : Pfam (NCBI)pfam04909   
Conserved Domain (NCBI)ACMSD
DMDM Disease mutations130013
Blocks (Seattle)ACMSD
PDB (SRS)2WM1    4IGM    4IGN    4IH3    4OFC   
PDB (PDBSum)2WM1    4IGM    4IGN    4IH3    4OFC   
PDB (IMB)2WM1    4IGM    4IGN    4IH3    4OFC   
PDB (RSDB)2WM1    4IGM    4IGN    4IH3    4OFC   
Structural Biology KnowledgeBase2WM1    4IGM    4IGN    4IH3    4OFC   
SCOP (Structural Classification of Proteins)2WM1    4IGM    4IGN    4IH3    4OFC   
CATH (Classification of proteins structures)2WM1    4IGM    4IGN    4IH3    4OFC   
SuperfamilyQ8TDX5
Human Protein AtlasENSG00000153086
Peptide AtlasQ8TDX5
HPRD12326
IPIIPI00152656   IPI00064913   IPI00749395   
Protein Interaction databases
DIP (DOE-UCLA)Q8TDX5
IntAct (EBI)Q8TDX5
FunCoupENSG00000153086
BioGRIDACMSD
STRING (EMBL)ACMSD
ZODIACACMSD
Ontologies - Pathways
QuickGOQ8TDX5
Ontology : AmiGOaminocarboxymuconate-semialdehyde decarboxylase activity  protein binding  cytosol  tryptophan catabolic process  cellular nitrogen compound metabolic process  small molecule metabolic process  metal ion binding  quinolinate metabolic process  extracellular exosome  
Ontology : EGO-EBIaminocarboxymuconate-semialdehyde decarboxylase activity  protein binding  cytosol  tryptophan catabolic process  cellular nitrogen compound metabolic process  small molecule metabolic process  metal ion binding  quinolinate metabolic process  extracellular exosome  
Pathways : KEGGTryptophan metabolism   
NDEx NetworkACMSD
Atlas of Cancer Signalling NetworkACMSD
Wikipedia pathwaysACMSD
Orthology - Evolution
OrthoDB130013
GeneTree (enSembl)ENSG00000153086
Phylogenetic Trees/Animal Genes : TreeFamACMSD
HOVERGENQ8TDX5
HOGENOMQ8TDX5
Homologs : HomoloGeneACMSD
Homology/Alignments : Family Browser (UCSC)ACMSD
Gene fusions - Rearrangements
Fusion: TCGARAB3GAP1 ACMSD
Fusion: TCGASESTD1 ACMSD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerACMSD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ACMSD
dbVarACMSD
ClinVarACMSD
1000_GenomesACMSD 
Exome Variant ServerACMSD
ExAC (Exome Aggregation Consortium)ACMSD (select the gene name)
Genetic variants : HAPMAP130013
Genomic Variants (DGV)ACMSD [DGVbeta]
DECIPHER (Syndromes)2:135596186-135659602  ENSG00000153086
CONAN: Copy Number AnalysisACMSD 
Mutations
ICGC Data PortalACMSD 
TCGA Data PortalACMSD 
Broad Tumor PortalACMSD
OASIS PortalACMSD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICACMSD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDACMSD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ACMSD
DgiDB (Drug Gene Interaction Database)ACMSD
DoCM (Curated mutations)ACMSD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ACMSD (select a term)
intoGenACMSD
Cancer3DACMSD(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608889   
Orphanet
MedgenACMSD
Genetic Testing Registry ACMSD
NextProtQ8TDX5 [Medical]
TSGene130013
GENETestsACMSD
Huge Navigator ACMSD [HugePedia]
snp3D : Map Gene to Disease130013
BioCentury BCIQACMSD
ClinGenACMSD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD130013
Chemical/Pharm GKB GenePA134973312
Clinical trialACMSD
Miscellaneous
canSAR (ICR)ACMSD (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineACMSD
EVEXACMSD
GoPubMedACMSD
iHOPACMSD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:53:29 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.